Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella amazonensis SB2B

 Score =  187 bits (476), Expect = 1e-52
 Identities = 96/249 (38%), Positives = 153/249 (61%), Gaps = 7/249 (2%)

Query: 15  LFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSINVAVFSATAAT 74
           +FLY P+ +LI  SFN +K    WGGF+ KWY  L  +  ++ A W S+ +A  SA+ A 
Sbjct: 16  IFLYAPMFILIFYSFNASKLVTVWGGFSAKWYVELFKDQQILDAVWTSLEIAFLSASMAV 75

Query: 75  LIGSLTAVALFRYQFKGKKV-VSGMLFVVMMSPDIVMAISLLALFLVMG------AKLGF 127
           ++G++ A  + R++    K+ +S M+   ++ P+++  +SLL LF+ M       A+ G 
Sbjct: 76  VLGTMAAFVMTRFRRSWAKLSLSNMITAPLVMPEVITGLSLLLLFVHMADLIGWPAERGR 135

Query: 128 FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKPAVAAG 187
            T+ +AH TFC  +V V V +RL   D+ + EAA DLGA        I +P+  PA+ AG
Sbjct: 136 LTIWLAHSTFCAAYVAVVVSSRLRELDMSIEEAAMDLGATPLKTFFLITVPMIAPALTAG 195

Query: 188 WLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVMLVVSLVLVVAS 247
           WLLSF+LSLDD++I+SF +GP    LP+ ++S V++G+SP++NALAT++++   ++   S
Sbjct: 196 WLLSFSLSLDDLVIASFASGPGATTLPMVVFSSVRLGVSPKINALATLIILAVSLIAFLS 255

Query: 248 QLLAREKVK 256
              AR   K
Sbjct: 256 WYFARRAEK 264