Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  212 bits (540), Expect = 6e-60
 Identities = 104/253 (41%), Positives = 171/253 (67%), Gaps = 8/253 (3%)

Query: 10  MSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSINVAVFS 69
           M   + FLY+PI++L+  SFNE++    W GF+ KWY AL+ ++ ++ AAW S  +AV +
Sbjct: 11  MGFGFAFLYVPILLLMIYSFNESRLVTVWAGFSAKWYGALLRDEQMLGAAWMSFRIAVVN 70

Query: 70  ATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMGAKLGF- 127
           A+ AT++G+L A+A+ R+ +F+G+ + SGML   ++ P+++  ++ L LF+ +   LG+ 
Sbjct: 71  ASLATILGTLAALAMVRFGRFRGRTLFSGMLSAPLVMPEVITGLASLLLFVALEQLLGWP 130

Query: 128 -----FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKP 182
                 T+ IAHITF   +V V + +RL G D  + EAA DLGA    +   I +P+  P
Sbjct: 131 QGRGMTTITIAHITFSTAYVAVVLQSRLQGMDRSIEEAAMDLGARPAKVFLLITIPVIAP 190

Query: 183 AVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVM-LVVSL 241
           A+ AGWLLSFTLSLDD++I+SFV+GP    LP+ ++S V++G+SPE+NALAT++ L  ++
Sbjct: 191 ALVAGWLLSFTLSLDDLVIASFVSGPASSTLPMVVFSSVRLGVSPEINALATILVLTATV 250

Query: 242 VLVVASQLLAREK 254
            +++A  ++ R++
Sbjct: 251 AILIAGWMMTRQE 263