Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  196 bits (498), Expect = 4e-55
 Identities = 104/263 (39%), Positives = 162/263 (61%), Gaps = 9/263 (3%)

Query: 3   RSIRFSFMSLV--YLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAW 60
           R + FS + L     FLY P+ +L+  SFNE+K    WGGF+ KWY  L  +D ++ A  
Sbjct: 6   RKLSFSTLMLWGGMFFLYAPMFILVFYSFNESKLVTVWGGFSAKWYGELFRDDQILDAVA 65

Query: 61  HSINVAVFSATAATLIGSLTAVALFRYQFK-GKKVVSGMLFVVMMSPDIVMAISLLALFL 119
            S+ VA F++T A ++G++ A  + R+    GK  +S M+   ++ P+++  +SLL LF+
Sbjct: 66  TSLKVAFFASTMAVILGTMAAFVMTRFARSWGKMTLSNMITAPLVMPEVITGLSLLLLFV 125

Query: 120 VMG------AKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILK 173
            M       A+ G  T+ IAH TFC  +V V V +RL   D+ + EAA+DLGA       
Sbjct: 126 HMADLLGWPAERGMLTVWIAHSTFCAAYVAVVVSSRLRELDMSIEEAAQDLGATPLKTFF 185

Query: 174 KIILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALA 233
            I +P+  PA+ AGWLLSF+LSLDD++I+SF +GP    LP+ ++S V++G+SP++NALA
Sbjct: 186 HITVPMISPALIAGWLLSFSLSLDDLVIASFASGPGATTLPMVVFSSVRMGVSPKINALA 245

Query: 234 TVMLVVSLVLVVASQLLAREKVK 256
           T+++++  ++   S  LAR   K
Sbjct: 246 TLIILIVSLIAFISWYLARRADK 268