Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 266 a.a., spermidine/putrescine ABC transporter membrane protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  294 bits (753), Expect = 1e-84
 Identities = 139/254 (54%), Positives = 195/254 (76%)

Query: 3   RSIRFSFMSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHS 62
           R++R   + LVY FLY+PI+V+I  SFN+ ++  +W GFT KWY AL  N  L+ AA +S
Sbjct: 13  RTLRTGLVWLVYAFLYVPILVVIVYSFNDARYTTEWKGFTLKWYSALAANGPLVDAALNS 72

Query: 63  INVAVFSATAATLIGSLTAVALFRYQFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMG 122
           ++VA  +AT AT++G+L A+ + RY+F G+KV+ G ++V+ +SPDIVM ISLL  F+ MG
Sbjct: 73  LSVATLAATIATVLGTLAAICIRRYRFPGRKVLHGCIYVLTVSPDIVMGISLLIFFIAMG 132

Query: 123 AKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKP 182
            +LGF+TLL AH+T  LPFV VTV  RL  FD +++EAA+DLGA EW   + ++LPLA P
Sbjct: 133 VQLGFWTLLAAHVTLALPFVTVTVLARLAEFDEQLIEAARDLGASEWRAFRHVLLPLAAP 192

Query: 183 AVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVMLVVSLV 242
           AVAAGWLLSFTLS+DDV++S FVTGPT+E+LPL++YSMV++G+ P++NAL+ VM  V++V
Sbjct: 193 AVAAGWLLSFTLSMDDVLVSFFVTGPTFEVLPLRVYSMVRLGVKPDINALSAVMFTVTIV 252

Query: 243 LVVASQLLAREKVK 256
           LV+ +Q L R + K
Sbjct: 253 LVLLAQTLTRTRRK 266