Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  196 bits (497), Expect = 5e-55
 Identities = 103/263 (39%), Positives = 163/263 (61%), Gaps = 9/263 (3%)

Query: 3   RSIRFSFMSLVY--LFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAW 60
           + + FS + L +  LFLY P+++L+  SFNE+K    WGGF+ KWY  L  +  ++ A W
Sbjct: 2   KKLSFSSVMLWFGLLFLYAPMLILVIYSFNESKLVTVWGGFSPKWYGELFKDQQILDAVW 61

Query: 61  HSINVAVFSATAATLIGSLTAVALFRYQFKGKKV-VSGMLFVVMMSPDIVMAISLLALFL 119
            S+ +A +S+T A +IG++ A  + R++    K+ +S M+   ++ P+++  +SLL LF+
Sbjct: 62  TSLRIAFYSSTMAVIIGTMAAFVMTRFKRSWAKLTLSNMITAPLVMPEVITGLSLLLLFV 121

Query: 120 VMGAKLGF------FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILK 173
            M   LG+       T+ IAH TFC  +V V V +RL   D  + EAA DLGA       
Sbjct: 122 HMADLLGWPKERGMVTVWIAHSTFCAAYVAVVVSSRLRELDRSIEEAAMDLGATPLKTFF 181

Query: 174 KIILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALA 233
            I +P+  PA+ AGWLLSF+LSLDD++ISSF +GP    LP+ ++S V++G+SP++NALA
Sbjct: 182 LITVPMISPALVAGWLLSFSLSLDDLVISSFASGPGATTLPMVVFSSVRLGVSPKINALA 241

Query: 234 TVMLVVSLVLVVASQLLAREKVK 256
           T++++   ++   S  +AR   K
Sbjct: 242 TLIILCVSLIAFLSWYMARRAEK 264