Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 268 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  153 bits (386), Expect = 4e-42
 Identities = 83/258 (32%), Positives = 148/258 (57%), Gaps = 3/258 (1%)

Query: 1   MGRSIRFSFMSLVYLFLYLPIIVLIANSFNENKF-GIKWGGFTTKWYHALMNNDSLMQAA 59
           M R + +++  +  +FLYLP+ +L   +FN++        GFT  W+  L    +L  A 
Sbjct: 1   MSRRVLWTYAVVYLVFLYLPVALLPIFAFNDSTIIAFPLSGFTISWFVELTQIPALHDAV 60

Query: 60  WHSINVAVFSATAATLIGSLTAVALFRYQFKGKKVVSGMLFVVMMSPDIVMAISLLALFL 119
            +S+ +A+ +A  +T +G   + A  R++F GK  + G + + ++ P+I++A+SLL + L
Sbjct: 61  RNSLIIALSTAVFSTALGVFASRAATRFEFPGKAGIMGFIMIPLVLPEIIVAVSLLVVLL 120

Query: 120 VMGAKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPL 179
            MG  L  + +++ H   C PF +  + +  +G D  + EAA DLG       + IILPL
Sbjct: 121 QMGLNLSLWAVILGHTLICTPFCIAILSSSFSGLDRSLEEAAIDLGETRLSAFRLIILPL 180

Query: 180 AKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGIS-PEVNALATVMLV 238
             P + A  L+SFT+SLD+ II+ F+TG T   LP+ I+S ++     P + AL T++++
Sbjct: 181 VAPGIVASLLISFTISLDEFIIAFFLTG-TDPTLPVYIWSQLRFPQKLPVIMALGTILIL 239

Query: 239 VSLVLVVASQLLAREKVK 256
           +SLVL++ ++   R  ++
Sbjct: 240 LSLVLIITAEAFRRRGLR 257