Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., putrescine/spermidine ABC transporter permease from Burkholderia phytofirmans PsJN

 Score =  192 bits (489), Expect = 5e-54
 Identities = 101/252 (40%), Positives = 161/252 (63%), Gaps = 7/252 (2%)

Query: 3   RSIRFSFMSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHS 62
           R ++   + + +LFLY+PI+ LI  SFNE++    W  F+T+WY AL+ +D L+ AAW S
Sbjct: 5   RILQLIALGIGFLFLYIPIVSLIVYSFNESQLVTVWTRFSTRWYAALLQDDELIAAAWLS 64

Query: 63  INVAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVM 121
           + VA+ +A A+ +IG+     L R  +F+G  + +GM+   ++ P+++  ISLL LF+ M
Sbjct: 65  LRVALLTAFASVVIGTWAGFVLARMGRFRGFTLYTGMINAPLVIPEVIQGISLLLLFIEM 124

Query: 122 GAKLGF------FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKI 175
              LG+      FT+ I H+  C+ +V + V +R+      + EAA DLGA    +   I
Sbjct: 125 AKWLGWPAGRGIFTIWIGHVMLCISYVAIIVQSRVKELHPSLEEAALDLGATPLRVFFFI 184

Query: 176 ILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATV 235
            LPL   A+ +GWLLSFTLS+DD+++S+F++GP    LPL ++S V++G++PE+NALAT+
Sbjct: 185 TLPLISQALVSGWLLSFTLSIDDLVLSAFLSGPGSTTLPLVVFSRVRLGLNPEMNALATL 244

Query: 236 MLVVSLVLVVAS 247
            + V  V VVA+
Sbjct: 245 FIAVVTVGVVAA 256