Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  172 bits (437), Expect = 9e-48
 Identities = 113/321 (35%), Positives = 173/321 (53%), Gaps = 22/321 (6%)

Query: 1   MKKLATLLAGSAC-ALSLL---SGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIY 56
           MK L   +AG    A+SL+   +G   A+DK L   NW  YI    + +F KE+GIKV+Y
Sbjct: 6   MKTLGMKIAGKTLLAMSLMGVMAGAVQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVY 65

Query: 57  STYESNETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLD- 115
             ++SNETL AKL     GYD+VVPS  F+AK    G+ QK+DKSKL N+KNL+++ L  
Sbjct: 66  DVFDSNETLEAKLLAGKSGYDIVVPSNNFLAKQIKAGVYQKLDKSKLPNWKNLNTDLLKA 125

Query: 116 -KPYDPNNDYSIPHVVAITGLAVNTD-----MYDPNDFQSWGDLWKPELKGQL-----ML 164
               DP N+++ P++    G+  N +     +       SW  L+KPE   +L       
Sbjct: 126 VSVSDPGNEHAFPYMWGSIGIGFNPEKVKAALGADAPTNSWDLLFKPENAAKLKACGISF 185

Query: 165 MDDTREVFHIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGL 224
           +D   E+  +AL  LGY  +S D KQ+ EA A   K+ P++  F+S    +   +G + +
Sbjct: 186 LDSPTEMIPVALHYLGYPTDSQDKKQLAEAEALFLKIRPSIGYFHSSKYISDLANGNICV 245

Query: 225 GMLWNG----SAAAAQKEGLPIKLVF--PKEGGIGWVDNFAISSGAKNVDAAHKMIDFLL 278
            + ++G    + + A + G  +K+ +  PKEG   + D  AI   A+NV+ A+K + FL 
Sbjct: 246 AVGYSGDIYQAKSRAAEAGGKVKVSYNIPKEGAGSFFDMVAIPKDAENVEGAYKFMTFLQ 305

Query: 279 RPEIAEQISRDTGYLTGVKAS 299
           +PEI  +I+    +  G  AS
Sbjct: 306 KPEIMAEITDTVSFPNGNAAS 326