Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  162 bits (409), Expect = 2e-44
 Identities = 103/320 (32%), Positives = 164/320 (51%), Gaps = 20/320 (6%)

Query: 1   MKKLATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETG-IKVIYSTY 59
           M +L   +A + CA +LL G   AE++ L   NW  YI    LE F  +   +K++Y  +
Sbjct: 1   MNRLKRFMAPAVCA-ALLCGAVQAEERTLRVYNWFDYITPKALEDFKAQNSQVKLVYDIF 59

Query: 60  ESNETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNY--LDKP 117
           ++NE L AKL T N GYD+VVPS  F+AK  + G+ Q +D+SKL N+ +LD     L + 
Sbjct: 60  DTNEALEAKLLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWNHLDPKLMKLIEA 119

Query: 118 YDPNNDYSIPHVVAITGLAVNTD-----MYDPNDFQSWGDLWKPELKGQL-----MLMDD 167
            DP N +++P++     +  N D     + D     SW  ++K E   +L      L+D 
Sbjct: 120 NDPGNKFAVPYMYGTILIGFNPDKVKAALGDNAPVDSWDLIFKEENISKLKQCGVALLDS 179

Query: 168 TREVFHIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGML 227
             E+  +AL+ LG   NS       +A A + K+ P++  F+S    A   +G++ + + 
Sbjct: 180 PSEILPLALQHLGLDPNSKKPADYAKAEALMMKIRPHITYFHSSKYMADIANGDICVAVG 239

Query: 228 WNGSAAAA------QKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPE 281
           ++GS + A       K G+ + +  PKEG   W D  AI  GA N   A+  I++LL+P+
Sbjct: 240 YSGSFSQAANRAKEAKNGVTVDMRLPKEGAPIWFDMLAIPKGAANPGDAYAFINYLLQPQ 299

Query: 282 IAEQISRDTGYLTGVKASND 301
           +   +S   GY    K + D
Sbjct: 300 VIAPVSDFVGYPNPNKDATD 319