Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  150 bits (379), Expect = 5e-41
 Identities = 93/308 (30%), Positives = 157/308 (50%), Gaps = 20/308 (6%)

Query: 4   LATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNE 63
           L   L G+  ++ L+SG + AE++ +   NW  Y+   IL+ F +ETGI+ IY  ++S E
Sbjct: 5   LRNTLLGAVVSM-LVSGASLAEERTVRIYNWIEYLPPEILKSFEEETGIRPIYDVFDSVE 63

Query: 64  TLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNY---LDKPYDP 120
           TL +KL T N GYD+V PS+  V+ +   G +Q +D+S+L N+++LD  +   L+   D 
Sbjct: 64  TLESKLLTGNSGYDVVYPSSSNVSHLIAAGAVQPLDRSQLPNWQHLDPEFMKTLEAIGDE 123

Query: 121 NNDYSIPHVVAITGLAVNTD-----MYDPNDFQSWGDLWKPELKGQLM-----LMDDTRE 170
            N Y+ P++   T +  N D     +       +W  ++K E   +L       +D   E
Sbjct: 124 GNRYAAPYLWGTTLIGYNVDKVRQVLGADVQMNTWDIIFKEENMAKLASCGVGFLDAANE 183

Query: 171 VFHIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNG 230
           +  IAL   G   NS   +   +A A +  + P +  FNS        +GE+ +G+ W+G
Sbjct: 184 IVPIALHYKGLDPNSQKREDYPQAQAAMHTVRPYITYFNSSRYGMDLANGEICVGVGWSG 243

Query: 231 SAAAAQK------EGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAE 284
             A A +      +G+ + +  PKEG   W D   + + A +   A+  I+++LRP++  
Sbjct: 244 GVALATRLADAAGKGVKVAMALPKEGAPMWADVMMVPTNAPHTAEAYAFINYILRPDVIA 303

Query: 285 QISRDTGY 292
           +IS   GY
Sbjct: 304 RISNKIGY 311