Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

 Score =  180 bits (457), Expect = 4e-50
 Identities = 120/363 (33%), Positives = 191/363 (52%), Gaps = 29/363 (7%)

Query: 4   LATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNE 63
           LA  LAG+      ++G A A++K L   NW  YI    LE FTKETGIKV+Y  ++SNE
Sbjct: 9   LAMTLAGT------VAGAAQAQEKVLHVYNWSDYIAEDTLENFTKETGIKVVYDVFDSNE 62

Query: 64  TLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLD--KPYDPN 121
            L AKL   + GYD+VVPS  F+AK    G+ QK+DKSKL N++NLD + L   +P DP 
Sbjct: 63  VLEAKLLAGSSGYDVVVPSNPFLAKQIKAGVFQKLDKSKLPNWENLDKDLLKALEPSDPG 122

Query: 122 NDYSIPHVVAITGLAVNTD-----MYDPNDFQSWGDLWKPE----LKG-QLMLMDDTREV 171
           N YSIP++    G+  N D     + D     SW  ++KPE    LK   +  +D   E+
Sbjct: 123 NQYSIPYMWGTIGIGYNVDKVKAVLGDNAPVDSWDLVFKPENIEKLKSCGVAFLDSPTEM 182

Query: 172 FHIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNG- 230
              AL  LGY+ +S    ++ +A     ++ P+V  F+S    +   +G + + + ++G 
Sbjct: 183 LPAALHYLGYAPDSGKADELKKAEDLFMQIRPHVAYFHSSKYISDLANGNICVAIGYSGD 242

Query: 231 -----SAAAAQKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQ 285
                S A     G+ +    PKEG   + D  A+ + AKNV++AH  I++L++P++   
Sbjct: 243 IYQGKSRAEEAANGVNVGYKIPKEGAGSFFDMLAVPADAKNVESAHAFINYLMKPDVMAS 302

Query: 286 ISRDTGYLTGVKAS----NDKFQDVAPLFPSQEDLDRVEWQSAVGDKTVK-YEEYFMKLK 340
           I+    +  G  A+    ++  +    ++PSQ  L ++     +  KT +     + K+K
Sbjct: 303 ITNYVQFPNGNAAATPLLDEAIRTDEGIYPSQAVLQKLYTFPDLDPKTQRAMTRSWTKIK 362

Query: 341 AGQ 343
           +G+
Sbjct: 363 SGR 365