Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

 Score =  166 bits (421), Expect = 7e-46
 Identities = 109/330 (33%), Positives = 165/330 (50%), Gaps = 21/330 (6%)

Query: 11  SACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNETLYAKLK 70
           S    + ++G A A+   +   NW  YI    LE+F KETGIK +Y  ++SNETL  KL 
Sbjct: 7   SLLVAAAMTGAATAQAASVHIYNWSDYIGETTLEEFEKETGIKPVYDVFDSNETLEGKLL 66

Query: 71  THNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLD--KPYDPNNDYSIPH 128
               GYD+VVPS +F+ K    G  Q +DKSKL N+++LD   L   +  DP N ++ P+
Sbjct: 67  AGRSGYDVVVPSNHFLGKQIRAGAFQALDKSKLPNWEHLDPALLKQLQKNDPGNAHAAPY 126

Query: 129 VVAITGLAVNTDMYDP----NDFQSWGDLWKPELKGQL-----MLMDDTREVFHIALRKL 179
           +    G+  N +        ++  SW  +++PE   +L       +D   E+    L  L
Sbjct: 127 LWGTNGIGYNVEKVKAALGVDEIDSWSVIFEPENAAKLASCGIAFLDSADEMIPAMLNYL 186

Query: 180 GYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNGSA--AAAQK 237
           G   NS +     +A  +L  + P+V  F+S    +   +G + +   ++G    AAA+ 
Sbjct: 187 GLDPNSENAADYQKAEEKLLAVRPHVRYFHSSKYISDLANGNICVAAGFSGDVFQAAARA 246

Query: 238 E----GLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGYL 293
           E    G+ I    P EG   W D  AI + A NV+ AH  I++LLRPE+   +S   GY 
Sbjct: 247 EEAGKGIEIAYAIPAEGANLWFDMLAIPADASNVEEAHAFINYLLRPEVIAAVSDYVGYA 306

Query: 294 T-GVKASNDKFQDV---APLFPSQEDLDRV 319
              +KA     Q+V   A ++P QE LDR+
Sbjct: 307 NPNLKAGELMDQEVREDASVYPPQEVLDRL 336