Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., putrescine-binding periplasmic protein from Sinorhizobium meliloti 1021

 Score =  171 bits (434), Expect = 2e-47
 Identities = 103/338 (30%), Positives = 179/338 (52%), Gaps = 26/338 (7%)

Query: 4   LATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNE 63
           +ATL        ++L   A A+++ +   NW  YI+  ILE+FTKETGIKV+Y  ++SNE
Sbjct: 6   VATLTTAVLAGSTIL---AFAQERVVNVYNWSDYIDDSILEEFTKETGIKVVYDVFDSNE 62

Query: 64  TLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDK--PYDPN 121
            L  KL     GYD+VVP+ YF+ +    G+ QK+DKSKL N  N+    +++   YDP 
Sbjct: 63  ILETKLLAGGSGYDVVVPTAYFLQRQIAAGVFQKLDKSKLPNISNMWDMVMERTAQYDPG 122

Query: 122 NDYSIPHVVAITGLAVNT----DMYDPNDFQSWGDLWKPELKGQ-----LMLMDDTREVF 172
           N+Y++ ++   TG+  N     ++   ++  +W  ++ PE+  +     + L+D   ++ 
Sbjct: 123 NEYAVDYMWGTTGIGYNVEKMKEILGTDEKPNWDVIFDPEIAAKFKDCGIHLLDSPTDIM 182

Query: 173 HIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNGSA 232
             AL  LG + +S D   +++A   L K+ PN+  F+S        +G++ L + ++G  
Sbjct: 183 PSALAYLGLNPDSHDQADLEKAADLLMKVRPNIRKFHSSEYINALANGDICLAVGFSGDV 242

Query: 233 ------AAAQKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQI 286
                 AA  K G+ +    P++G   W D  AI + A +V  AH+ I+++++PE+  + 
Sbjct: 243 FQARDRAAEAKAGVTVDYSIPEQGAQMWFDMLAIPADAPHVAEAHEFINYMMKPEVIAKA 302

Query: 287 SRDTGYLTGVKAS-----NDKFQDVAPLFPSQEDLDRV 319
           S    Y  G KAS      +  +D A ++PS   + ++
Sbjct: 303 SNYVFYANGNKASQQFLDKEVLEDTA-IYPSDAVMQKL 339