Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  171 bits (434), Expect = 2e-47
 Identities = 116/366 (31%), Positives = 180/366 (49%), Gaps = 23/366 (6%)

Query: 1   MKKLATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYE 60
           MK L  + A +     +L   A + ++ +   NW  YI    LE F KETGI+VIY  ++
Sbjct: 1   MKLLHKMTALALVTAGVLGSAAVSAEEVVRVYNWSDYIAEDTLENFQKETGIRVIYDVFD 60

Query: 61  SNETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLD--KPY 118
           +NE L AKL +   GYDLVVPS +F+AK    G   K+DKSKL+N K+L+ N +   +  
Sbjct: 61  TNEVLEAKLLSGRSGYDLVVPSAHFLAKQIKAGAFMKLDKSKLTNEKHLNKNLMTQLQKS 120

Query: 119 DPNNDYSIPHVVAITGLAVNTD-----MYDPNDFQSWGDLWKPE-----LKGQLMLMDDT 168
           DP N++++P++   TG+  N       + +     SW  ++ P       K  + ++D  
Sbjct: 121 DPGNEHAVPYLWGTTGIGFNVAKVKEVLGEDAPVDSWDLIFNPANAEKLAKCGIAVLDSP 180

Query: 169 REVFHIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLW 228
            E+   AL  LG + NSTD    ++A   L K+ P +  F+S    +   +GE+   + W
Sbjct: 181 DEILPPALNYLGLNPNSTDPADYEKAGEVLLKIRPYLKYFHSSRYISDLANGEICAAIGW 240

Query: 229 NGSAAAAQK------EGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEI 282
           +G    AQ        G  +    PKEG   W D  AI + A N D A   +++L+RPE+
Sbjct: 241 SGDVLQAQARAEEAGNGQQVDYRIPKEGAPLWFDMMAIPADAANADNALTFMNYLMRPEV 300

Query: 283 AEQISRDTGYLTGVKASNDKF-QDVA---PLFPSQEDLDRVEWQSAVGDKTVK-YEEYFM 337
              IS    Y      SN    ++VA    ++PS+E L ++        KT +     + 
Sbjct: 301 IASISNYVAYANANDGSNPLLDEEVAKNPAVYPSEETLAKLYLGEVRPMKTQRAMTRIWT 360

Query: 338 KLKAGQ 343
           K+K+GQ
Sbjct: 361 KIKSGQ 366