Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., extracellular solute-binding protein, family 1 (NCBI) from Rhodospirillum rubrum S1H

 Score =  174 bits (442), Expect = 2e-48
 Identities = 110/336 (32%), Positives = 173/336 (51%), Gaps = 24/336 (7%)

Query: 8   LAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNETLYA 67
           L+G A AL +    AAAEDK L   NW  YI    L +F  ETGIKV Y  Y+SNE L +
Sbjct: 9   LSGVAVALLIAGPAAAAEDKVLNVYNWSDYIAEDTLAKFQAETGIKVNYDVYDSNELLES 68

Query: 68  KLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDK--PYDPNNDYS 125
           KL   + GYD+VVP+ + ++++   G++QK+DK+K+ N  NLD     +   YD +N +S
Sbjct: 69  KLLAGSSGYDIVVPTDHTLSRLIQAGIVQKLDKAKIPNLANLDPKLTARAAAYDADNAHS 128

Query: 126 IPHVVAITGLAVNTD-----MYDPNDFQSWGDLWKPELKGQLM-----LMDDTREVFHIA 175
           + +     GL +N D     +       S+  L+KPE   +L      ++D   EVF +A
Sbjct: 129 VIYEWGTNGLGINIDKVRAALGPDVKLDSFDLLFKPEYAEKLASCGIHVLDSAAEVFSVA 188

Query: 176 LRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNGSAAAA 235
              LG   NSTD K +++A A    + P +  F+S        +G++ +   ++G    A
Sbjct: 189 RNYLGLEPNSTDPKDLEKATALWMGVRPYIQKFHSSEFINALANGDICVAFGYSGDIFQA 248

Query: 236 QKE--------GLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQIS 287
           Q +        G+ I  + PKEG + W D  A+ + A + + AHK IDF+L+P+I+  IS
Sbjct: 249 QAQARAKEAANGVKIDYIIPKEGTLIWFDLMAVPADAPHPENAHKFIDFILQPQISADIS 308

Query: 288 RDTGYLTGVKASNDKFQDVA----PLFPSQEDLDRV 319
               Y      + +   +       ++P+QE +DR+
Sbjct: 309 NYVWYANANSKATELLDEAVRTNPSIYPTQEVMDRL 344