Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  157 bits (397), Expect = 4e-43
 Identities = 110/341 (32%), Positives = 174/341 (51%), Gaps = 25/341 (7%)

Query: 1   MKKLATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYE 60
           +KK+ TL   +A   +  S   +AE+   V+ NW  YI    L  F KETGIKVIY  ++
Sbjct: 4   LKKMTTLALVTAGVFT--SSVVSAEEVVRVY-NWSDYIAEDTLANFEKETGIKVIYDVFD 60

Query: 61  SNETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLD--KPY 118
           SNE + AKL +   GYD+VVPS  F+AK    G  QK+D+S+L+N KNL+   +   +  
Sbjct: 61  SNEVVEAKLLSGRSGYDIVVPSNNFLAKQIKAGAFQKLDQSQLTNHKNLNPELMKQLETA 120

Query: 119 DPNNDYSIPHVVAITGLAVNTD-----MYDPNDFQSWGDLWKPE-----LKGQLMLMDDT 168
           DP N++++P++   TG+  N       + +     S   ++ P+      K    L+D  
Sbjct: 121 DPRNEHAVPYLWGTTGIGYNEAKVKQVLGEDAPVDSLELIFNPKYAEKIAKCGFSLLDSA 180

Query: 169 REVFHIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLW 228
            E+  +A+  LG   NST  +   +A   + K+ P V  F+S        +G++ +   +
Sbjct: 181 DEMLPMAMIYLGLDPNSTKSEDYAKAGEVMAKIRPFVTYFHSSRYITDLANGDICVAFGY 240

Query: 229 NGSA--AAAQKE----GLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEI 282
           +G    AAA+ E    G  I    PKEG   W D  AI + AKNV  AH  I++LLRPE+
Sbjct: 241 SGDVFQAAARAEEAENGNVIGYAIPKEGSNLWFDMLAIPADAKNVKNAHTFINYLLRPEV 300

Query: 283 AEQISRDTGY----LTGVKASNDKFQDVAPLFPSQEDLDRV 319
              I+    Y    +   +  +++ ++ A ++P+ E L R+
Sbjct: 301 IAPITNYVAYANPNVPAQELVDEEIRNDAAIYPTPEVLSRL 341