Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (411), Expect = 1e-44
 Identities = 110/341 (32%), Positives = 180/341 (52%), Gaps = 28/341 (8%)

Query: 3   KLATLLAGSACALSLLSGTAAAEDKELVFM-NWGPYINSGILEQFTKETGIKVIYSTYES 61
           K+ TL   +A  L+    + A + +E+V M NW  YI    LE F KETGI+VIY  ++S
Sbjct: 6   KMTTLALVTAGTLA----SVAVQAEEVVRMYNWSDYIAEDTLENFKKETGIRVIYDVFDS 61

Query: 62  NETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLD--KPYD 119
           NE + AKL +   GYD+VVPS +F+AK    G  + +D+SKL+NFKNL+++ +   +  D
Sbjct: 62  NEVVEAKLLSGRSGYDIVVPSNHFLAKQIKAGAFKPLDRSKLTNFKNLNADLMKLLEKAD 121

Query: 120 PNNDYSIPHVVAITGLAVNTDMY------DPNDFQSWGDLWKPEL-----KGQLMLMDDT 168
           P N Y++P++    G+  N +        D   F S   ++ P+      K    ++D  
Sbjct: 122 PGNQYAVPYLWGTNGIGYNINKVKAAVGEDAPPFNSMELIFNPKYAEKISKCGFAMLDSA 181

Query: 169 REVFHIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLW 228
            ++   A+  LG   NST  +  ++A   L+K+ P V  F+S    +   +G++ +   +
Sbjct: 182 DDMVPQAMIYLGLDPNSTKAEDYEKAGELLEKIRPYVTYFHSSRYISDLANGDICVAYGF 241

Query: 229 NG----SAAAAQKEGLPIKLVF--PKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEI 282
           +G    +AA A + G   K+ +  PKEG   W D  AI + A NV+ AHK+I++LLRPE+
Sbjct: 242 SGDVFQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADATNVENAHKLINYLLRPEV 301

Query: 283 AEQISRDTGYLT----GVKASNDKFQDVAPLFPSQEDLDRV 319
              IS    Y           ++  ++   ++P +E LD++
Sbjct: 302 IAPISNYVAYANPNDLAQPLVDEAIRNDPAIYPPKEVLDKL 342