Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., extracellular solute-binding protein (RefSeq) from Shewanella sp. ANA-3

 Score =  167 bits (424), Expect = 3e-46
 Identities = 113/340 (33%), Positives = 183/340 (53%), Gaps = 27/340 (7%)

Query: 3   KLATLLAGSACALSLLSGTAAAEDKELVFM-NWGPYINSGILEQFTKETGIKVIYSTYES 61
           K+ TL   +A AL+    + AA+ +E+V + NW  YI    LE F KETGI+VIY  ++S
Sbjct: 27  KMTTLALVTAGALA----SVAAQAEEVVRVYNWSDYIAEDTLENFKKETGIRVIYDVFDS 82

Query: 62  NETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLD--KPYD 119
           NE L AKL +   GYD+VVPS +F+AK    G  + +D+SKLSNFKNL+++ +   +  D
Sbjct: 83  NEVLEAKLLSGRSGYDIVVPSNHFLAKQIKAGAFKPLDRSKLSNFKNLNADLMKQLEKAD 142

Query: 120 PNNDYSIPHVVAITGLAVNTD-----MYDPNDFQSWGDLWKPEL-----KGQLMLMDDTR 169
           P N Y++P++    G+  N D     + +   F S   ++ P+      K    ++D   
Sbjct: 143 PGNQYAVPYLWGTNGIGYNIDKVKAAVGEDAPFDSMELIFNPKYAEKISKCGFAMLDSAD 202

Query: 170 EVFHIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWN 229
           ++   A+  LG   NST  +  ++A   L+K+ P V  F+S    +   +G++ +   ++
Sbjct: 203 DMVPQAMIYLGLDPNSTKAEDYEKAGELLEKIRPYVTYFHSSRYISDLANGDICVAFGFS 262

Query: 230 G----SAAAAQKEGLPIKLVF--PKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIA 283
           G    +AA A + G   K+ +  PKEG   W D  AI + A NV+ AHK+I++LLRPE+ 
Sbjct: 263 GDVFQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADAANVENAHKLINYLLRPEVI 322

Query: 284 EQISRDTGYLT----GVKASNDKFQDVAPLFPSQEDLDRV 319
             IS    Y           ++  ++   ++P +E LD++
Sbjct: 323 APISNYVAYANPNDPAQPLVDEAIRNDPAIYPPKEVLDKL 362