Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  186 bits (473), Expect = 6e-52
 Identities = 110/336 (32%), Positives = 186/336 (55%), Gaps = 23/336 (6%)

Query: 4   KLFASALCAAALFTTNA---MAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESN 60
           K+    L A +L    A    A D+ L+ YNWS+YI  + +  F KE+GIKV+Y  ++SN
Sbjct: 12  KIAGKTLLAMSLMGVMAGAVQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVYDVFDSN 71

Query: 61  ESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDP 118
           E++ AKL    +GYD+VVPS  F++K  K G+ Q++D SKL ++K+L+ + L      DP
Sbjct: 72  ETLEAKLLAGKSGYDIVVPSNNFLAKQIKAGVYQKLDKSKLPNWKNLNTDLLKAVSVSDP 131

Query: 119 GNKFSIPYIWGATGIGINTDMLDKKSL------KNWGDLWDAKWAGQL-----MLMDDAR 167
           GN+ + PY+WG+ GIG N + + K +L       +W  L+  + A +L       +D   
Sbjct: 132 GNEHAFPYMWGSIGIGFNPEKV-KAALGADAPTNSWDLLFKPENAAKLKACGISFLDSPT 190

Query: 168 EVFHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWN 227
           E+  +AL  LGY  ++ + K++  A     K+ P++  F+S    +    G + + + ++
Sbjct: 191 EMIPVALHYLGYPTDSQDKKQLAEAEALFLKIRPSIGYFHSSKYISDLANGNICVAVGYS 250

Query: 228 GSAYMAR----QEGAPIQIIW--PEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENA 281
           G  Y A+    + G  +++ +  P++G   + D ++IP  A+N+E A+K + FL +PE  
Sbjct: 251 GDIYQAKSRAAEAGGKVKVSYNIPKEGAGSFFDMVAIPKDAENVEGAYKFMTFLQKPEIM 310

Query: 282 AKIALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSV 317
           A+I   + +P     +  L+ KE  +DP IYPP  V
Sbjct: 311 AEITDTVSFPNGNAASTPLVSKEITSDPGIYPPADV 346