Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  187 bits (476), Expect = 3e-52
 Identities = 105/334 (31%), Positives = 182/334 (54%), Gaps = 20/334 (5%)

Query: 4   KLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETG-IKVIYSTYESNES 62
           +  A A+CAA L      A+++ L  YNW +YI  + LEDF  +   +K++Y  +++NE+
Sbjct: 6   RFMAPAVCAALLCGA-VQAEERTLRVYNWFDYITPKALEDFKAQNSQVKLVYDIFDTNEA 64

Query: 63  MYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGN 120
           + AKL T  +GYD+VVPS  F++K  + G+ Q +D SKL ++  LDP  +   +  DPGN
Sbjct: 65  LEAKLLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWNHLDPKLMKLIEANDPGN 124

Query: 121 KFSIPYIWGATGIGINTDML-----DKKSLKNWGDLWDAKWAGQLM-----LMDDAREVF 170
           KF++PY++G   IG N D +     D   + +W  ++  +   +L      L+D   E+ 
Sbjct: 125 KFAVPYMYGTILIGFNPDKVKAALGDNAPVDSWDLIFKEENISKLKQCGVALLDSPSEIL 184

Query: 171 HIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSA 230
            +AL  LG  PN+  P +   A   + K+ P++  F+S         G++ + + ++GS 
Sbjct: 185 PLALQHLGLDPNSKKPADYAKAEALMMKIRPHITYFHSSKYMADIANGDICVAVGYSGSF 244

Query: 231 YMAR------QEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKI 284
             A       + G  + +  P++G   W D ++IP GA N   A+  I++LL+P+  A +
Sbjct: 245 SQAANRAKEAKNGVTVDMRLPKEGAPIWFDMLAIPKGAANPGDAYAFINYLLQPQVIAPV 304

Query: 285 ALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVI 318
           +  +GYP P K A D++     N+P++YP ++ +
Sbjct: 305 SDFVGYPNPNKDATDMVDPAIRNNPNLYPTEAAM 338