Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Probable periplasmic spermidine/putrescine-binding protein from Pseudomonas fluorescens FW300-N2E2

 Score =  159 bits (401), Expect = 1e-43
 Identities = 96/330 (29%), Positives = 168/330 (50%), Gaps = 20/330 (6%)

Query: 7   ASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAK 66
           AS LCA    +T+  A +  +Y YNW   +  E  ++F +ETG +V    ++S E M +K
Sbjct: 12  ASLLCAG--ISTSVAAVEPGMYLYNWFGLLAPETPKEFEQETGTRVHMDAFDSAEIMQSK 69

Query: 67  LKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PFDPGNKFSI 124
           +     GYD+VV ++  +  + + G+LQ +D S+LS+F  +DP+ L++    DPGN++++
Sbjct: 70  VMAGRTGYDVVVATSNVLPSLIRAGVLQPLDRSQLSNFSHIDPDLLSQLAVNDPGNRYAV 129

Query: 125 PYIWGATGIGINTDML-----DKKSLKNWGDLWDAKWAGQLM-----LMDDAREVFHIAL 174
           PY+WG TGIG + D +     D   + +W  ++  +   +L      ++D   E+  IAL
Sbjct: 130 PYLWGTTGIGYDVDKVRGALGDNAPVNSWDLIFKEENISKLQSCGVAMLDSPSEIISIAL 189

Query: 175 SKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMAR 234
           + LG   N+ NP + + A   L K+ P VL F+S         G +   + W   A  A+
Sbjct: 190 NYLGLPSNSKNPDDYQKAQALLLKIRPYVLYFDSSKIDADLADGNICAVVGWANGALAAQ 249

Query: 235 ------QEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEI 288
                   G  I    P +G + W +++ +   A + +     I++++RPE  AK +   
Sbjct: 250 AINEKANTGRKIAYSLPREGALSWSENLVLLKDAPHPKEGMAFINYMMRPEVIAKTSNHT 309

Query: 289 GYPTPVKTAHDLLPKEFANDPSIYPPQSVI 318
            YP   K A + + ++  ++P IYP +  I
Sbjct: 310 LYPNANKDAAEFVERKLRDNPWIYPDKKTI 339