Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  180 bits (456), Expect = 6e-50
 Identities = 101/333 (30%), Positives = 180/333 (54%), Gaps = 21/333 (6%)

Query: 1   MKNKLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESN 60
           ++N L  + +  + L +  ++A+++ +  YNW EY+P E+L+ F +ETGI+ IY  ++S 
Sbjct: 5   LRNTLLGAVV--SMLVSGASLAEERTVRIYNWIEYLPPEILKSFEEETGIRPIYDVFDSV 62

Query: 61  ESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNY---LNKPFD 117
           E++ +KL T  +GYD+V PS+  VS +   G +Q +D S+L +++ LDP +   L    D
Sbjct: 63  ETLESKLLTGNSGYDVVYPSSSNVSHLIAAGAVQPLDRSQLPNWQHLDPEFMKTLEAIGD 122

Query: 118 PGNKFSIPYIWGATGIGINTDMLDK-----KSLKNWGDLWDAKWAGQLM-----LMDDAR 167
            GN+++ PY+WG T IG N D + +       +  W  ++  +   +L       +D A 
Sbjct: 123 EGNRYAAPYLWGTTLIGYNVDKVRQVLGADVQMNTWDIIFKEENMAKLASCGVGFLDAAN 182

Query: 168 EVFHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWN 227
           E+  IAL   G  PN+   ++   A   +  + P +  FNS         GE+ +G+ W+
Sbjct: 183 EIVPIALHYKGLDPNSQKREDYPQAQAAMHTVRPYITYFNSSRYGMDLANGEICVGVGWS 242

Query: 228 GSAYMARQ------EGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENA 281
           G   +A +      +G  + +  P++G   W D + +P  A +   A+  I+++LRP+  
Sbjct: 243 GGVALATRLADAAGKGVKVAMALPKEGAPMWADVMMVPTNAPHTAEAYAFINYILRPDVI 302

Query: 282 AKIALEIGYPTPVKTAHDLLPKEFANDPSIYPP 314
           A+I+ +IGYP P K A  L+  E  ++P++Y P
Sbjct: 303 ARISNKIGYPNPNKDATALVDAEIRSNPAMYIP 335