Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

 Score =  202 bits (515), Expect = 8e-57
 Identities = 116/334 (34%), Positives = 186/334 (55%), Gaps = 21/334 (6%)

Query: 6   FASALCAAALFTT---NAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNES 62
           FA  L A  L  T    A A+++ L+ YNWS+YI  + LE+FTKETGIKV+Y  ++SNE 
Sbjct: 4   FAKTLLAMTLAGTVAGAAQAQEKVLHVYNWSDYIAEDTLENFTKETGIKVVYDVFDSNEV 63

Query: 63  MYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGN 120
           + AKL    +GYD+VVPS  F++K  K G+ Q++D SKL ++++LD + L   +P DPGN
Sbjct: 64  LEAKLLAGSSGYDVVVPSNPFLAKQIKAGVFQKLDKSKLPNWENLDKDLLKALEPSDPGN 123

Query: 121 KFSIPYIWGATGIGINTDML-----DKKSLKNWGDLWDAKWAGQL-----MLMDDAREVF 170
           ++SIPY+WG  GIG N D +     D   + +W  ++  +   +L       +D   E+ 
Sbjct: 124 QYSIPYMWGTIGIGYNVDKVKAVLGDNAPVDSWDLVFKPENIEKLKSCGVAFLDSPTEML 183

Query: 171 HIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSA 230
             AL  LGY+P++    E+K A     ++ P+V  F+S    +    G + + + ++G  
Sbjct: 184 PAALHYLGYAPDSGKADELKKAEDLFMQIRPHVAYFHSSKYISDLANGNICVAIGYSGDI 243

Query: 231 YMARQ------EGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKI 284
           Y  +        G  +    P++G   + D +++PA AKN+E+AH  I++L++P+  A I
Sbjct: 244 YQGKSRAEEAANGVNVGYKIPKEGAGSFFDMLAVPADAKNVESAHAFINYLMKPDVMASI 303

Query: 285 ALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVI 318
              + +P     A  LL +    D  IYP Q+V+
Sbjct: 304 TNYVQFPNGNAAATPLLDEAIRTDEGIYPSQAVL 337