Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

 Score =  207 bits (527), Expect = 3e-58
 Identities = 116/328 (35%), Positives = 180/328 (54%), Gaps = 17/328 (5%)

Query: 9   ALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAKLK 68
           +L  AA  T  A A+   ++ YNWS+YI    LE+F KETGIK +Y  ++SNE++  KL 
Sbjct: 7   SLLVAAAMTGAATAQAASVHIYNWSDYIGETTLEEFEKETGIKPVYDVFDSNETLEGKLL 66

Query: 69  TQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGNKFSIPY 126
              +GYD+VVPS +F+ K  + G  Q +D SKL +++ LDP  L   +  DPGN  + PY
Sbjct: 67  AGRSGYDVVVPSNHFLGKQIRAGAFQALDKSKLPNWEHLDPALLKQLQKNDPGNAHAAPY 126

Query: 127 IWGATGIGINTD----MLDKKSLKNWGDLWDAKWAGQL-----MLMDDAREVFHIALSKL 177
           +WG  GIG N +     L    + +W  +++ + A +L       +D A E+    L+ L
Sbjct: 127 LWGTNGIGYNVEKVKAALGVDEIDSWSVIFEPENAAKLASCGIAFLDSADEMIPAMLNYL 186

Query: 178 GYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYM----A 233
           G  PN+ N  + + A  +L  + P+V  F+S    +    G + +   ++G  +     A
Sbjct: 187 GLDPNSENAADYQKAEEKLLAVRPHVRYFHSSKYISDLANGNICVAAGFSGDVFQAAARA 246

Query: 234 RQEGAPIQIIW--PEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGYP 291
            + G  I+I +  P +G   W D ++IPA A N+E AH  I++LLRPE  A ++  +GY 
Sbjct: 247 EEAGKGIEIAYAIPAEGANLWFDMLAIPADASNVEEAHAFINYLLRPEVIAAVSDYVGYA 306

Query: 292 TPVKTAHDLLPKEFANDPSIYPPQSVID 319
            P   A +L+ +E   D S+YPPQ V+D
Sbjct: 307 NPNLKAGELMDQEVREDASVYPPQEVLD 334