Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., extracellular solute-binding protein, family 1 from Pseudomonas syringae pv. syringae B728a

 Score =  199 bits (506), Expect = 9e-56
 Identities = 109/332 (32%), Positives = 178/332 (53%), Gaps = 17/332 (5%)

Query: 5   LFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMY 64
           L  + L AA L  T     +  ++ YNWS+YI    L DF   TGIK +Y  ++SNE++ 
Sbjct: 6   LSKALLAAAGLTLTLGAQAESTVHIYNWSDYIGKTTLADFEATTGIKPMYDVFDSNETLE 65

Query: 65  AKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PFDPGNKF 122
           AKL     GYD+VVPS +F+ K  K G  Q++D S L ++K+LDP  L +    DPGN++
Sbjct: 66  AKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLPNYKNLDPALLKRLEKNDPGNQY 125

Query: 123 SIPYIWGATGIGINTD----MLDKKSLKNWGDLWDAKWAGQL-----MLMDDAREVFHIA 173
           ++PY+WG  GIG N +    +L    + +W  L++ +   +L       +D A E+    
Sbjct: 126 AVPYLWGTNGIGYNVEKVKAVLGVDKIDSWAVLFEPENIKKLSSCGVAFLDSADEMLPAV 185

Query: 174 LSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMA 233
           L+ LG  PN+T   + K A  +L  + P V  F+S         G++ +   ++G  + A
Sbjct: 186 LNYLGLDPNSTKEADYKEAEAKLMAIRPYVTYFHSSKYITDLANGDICVAAGFSGDVFQA 245

Query: 234 RQ------EGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALE 287
           +       +G  +    P++G   W D ++IPA +KNI+ A   I+++L P   AK++ E
Sbjct: 246 KARAEEAGKGVKLAYSIPKEGGNLWFDMLAIPADSKNIKQASAFINYMLDPRVIAKVSDE 305

Query: 288 IGYPTPVKTAHDLLPKEFANDPSIYPPQSVID 319
           +GY  P   + + + ++   D ++YPPQ V+D
Sbjct: 306 VGYANPNPASGEFMDQKIRTDAAVYPPQEVLD 337