Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., extracellular solute-binding protein, family 1 from Pseudomonas syringae pv. syringae B728a

 Score =  156 bits (394), Expect = 9e-43
 Identities = 96/336 (28%), Positives = 175/336 (52%), Gaps = 27/336 (8%)

Query: 5   LFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMY 64
           +   +L A  L  + + A +  +  YNW++YI  + L++F   TG K  Y T+E+NE++ 
Sbjct: 1   MLKKSLAALVLLASTSHAAET-VNIYNWTDYIAPDTLKNFEAATGFKTTYETFETNEALN 59

Query: 65  AKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGNKF 122
           AKL    +G+D+V PS +F+ +  + G+L+ +D  +L ++K+L+P  L   +  DPGN+ 
Sbjct: 60  AKLLAGHSGHDVVFPSIHFMGRQIQSGLLKTLDKRQLPNWKNLNPVLLKALEGSDPGNQH 119

Query: 123 SIPYIWGATGIGINTDMLDKKSLKNWG-DLWDAKWAGQ---------LMLMDDAREVFHI 172
             PY+WG+TGIG +T  +     K+   D WD     +         ++ +D A  +  I
Sbjct: 120 GFPYLWGSTGIGYDTTKVKAILGKDAPLDSWDLVLKPENMKKLAQCGVVFLDSAPALLPI 179

Query: 173 ALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLA----GEVSLGMLWNG 228
            L+ LG  P++  P +    YR+ K ++ +V  +  +F +  Y+A    G + + + ++G
Sbjct: 180 TLNYLGLPPHSEVPDD----YRQAKAVLDSVRPYVRNFSSADYIADLAKGRICVAVGYSG 235

Query: 229 SAYMARQE------GAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAA 282
               A+++      G  I    P++G   W D ++IPA A +I+ A+  +++LLRPE  A
Sbjct: 236 DISQAQEQAQKEGNGITIDYAVPKEGAPMWFDMVAIPADATDIKGAYAFLNYLLRPEVIA 295

Query: 283 KIALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVI 318
            I   + Y    + A  L+      D ++YP   ++
Sbjct: 296 NITNTVHYANGNEKADALIGPGLWTDTTVYPDADML 331