Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., putrescine-binding periplasmic protein from Sinorhizobium meliloti 1021

 Score =  203 bits (516), Expect = 6e-57
 Identities = 110/335 (32%), Positives = 188/335 (56%), Gaps = 19/335 (5%)

Query: 3   NKLFASALCAAALF--TTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESN 60
           +KL  + L  A L   T  A A+++ +  YNWS+YI   +LE+FTKETGIKV+Y  ++SN
Sbjct: 2   SKLIVATLTTAVLAGSTILAFAQERVVNVYNWSDYIDDSILEEFTKETGIKVVYDVFDSN 61

Query: 61  ESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PFDP 118
           E +  KL   G+GYD+VVP+ YF+ +    G+ Q++D SKL +  ++    + +   +DP
Sbjct: 62  EILETKLLAGGSGYDVVVPTAYFLQRQIAAGVFQKLDKSKLPNISNMWDMVMERTAQYDP 121

Query: 119 GNKFSIPYIWGATGIGINT----DMLDKKSLKNWGDLWDAKWAGQ-----LMLMDDAREV 169
           GN++++ Y+WG TGIG N     ++L      NW  ++D + A +     + L+D   ++
Sbjct: 122 GNEYAVDYMWGTTGIGYNVEKMKEILGTDEKPNWDVIFDPEIAAKFKDCGIHLLDSPTDI 181

Query: 170 FHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGS 229
              AL+ LG +P++ +  +++ A   L K+ PN+  F+S    N    G++ L + ++G 
Sbjct: 182 MPSALAYLGLNPDSHDQADLEKAADLLMKVRPNIRKFHSSEYINALANGDICLAVGFSGD 241

Query: 230 AYMAR------QEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAK 283
            + AR      + G  +    PE+G   W D ++IPA A ++  AH+ I+++++PE  AK
Sbjct: 242 VFQARDRAAEAKAGVTVDYSIPEQGAQMWFDMLAIPADAPHVAEAHEFINYMMKPEVIAK 301

Query: 284 IALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVI 318
            +  + Y    K +   L KE   D +IYP  +V+
Sbjct: 302 ASNYVFYANGNKASQQFLDKEVLEDTAIYPSDAVM 336