Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  196 bits (497), Expect = 1e-54
 Identities = 109/334 (32%), Positives = 187/334 (55%), Gaps = 18/334 (5%)

Query: 3   NKLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNES 62
           +K+ A AL  A +  + A++ ++ +  YNWS+YI  + LE+F KETGI+VIY  +++NE 
Sbjct: 5   HKMTALALVTAGVLGSAAVSAEEVVRVYNWSDYIAEDTLENFQKETGIRVIYDVFDTNEV 64

Query: 63  MYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGN 120
           + AKL +  +GYDLVVPS +F++K  K G   ++D SKL++ K L+ N +   +  DPGN
Sbjct: 65  LEAKLLSGRSGYDLVVPSAHFLAKQIKAGAFMKLDKSKLTNEKHLNKNLMTQLQKSDPGN 124

Query: 121 KFSIPYIWGATGIGINTDML-----DKKSLKNWGDLWDAKWAGQL-----MLMDDAREVF 170
           + ++PY+WG TGIG N   +     +   + +W  +++   A +L      ++D   E+ 
Sbjct: 125 EHAVPYLWGTTGIGFNVAKVKEVLGEDAPVDSWDLIFNPANAEKLAKCGIAVLDSPDEIL 184

Query: 171 HIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSA 230
             AL+ LG +PN+T+P + + A   L K+ P +  F+S    +    GE+   + W+G  
Sbjct: 185 PPALNYLGLNPNSTDPADYEKAGEVLLKIRPYLKYFHSSRYISDLANGEICAAIGWSGDV 244

Query: 231 YMARQ------EGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKI 284
             A+        G  +    P++G   W D ++IPA A N + A   +++L+RPE  A I
Sbjct: 245 LQAQARAEEAGNGQQVDYRIPKEGAPLWFDMMAIPADAANADNALTFMNYLMRPEVIASI 304

Query: 285 ALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVI 318
           +  + Y      ++ LL +E A +P++YP +  +
Sbjct: 305 SNYVAYANANDGSNPLLDEEVAKNPAVYPSEETL 338