Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., extracellular solute-binding protein, family 1 (NCBI) from Rhodospirillum rubrum S1H

 Score =  192 bits (489), Expect = 9e-54
 Identities = 109/320 (34%), Positives = 180/320 (56%), Gaps = 20/320 (6%)

Query: 20  AMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAKLKTQGAGYDLVVP 79
           A A+D+ L  YNWS+YI  + L  F  ETGIKV Y  Y+SNE + +KL    +GYD+VVP
Sbjct: 23  AAAEDKVLNVYNWSDYIAEDTLAKFQAETGIKVNYDVYDSNELLESKLLAGSSGYDIVVP 82

Query: 80  STYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PFDPGNKFSIPYIWGATGIGINT 137
           + + +S++ + G++Q++D +K+ +  +LDP    +   +D  N  S+ Y WG  G+GIN 
Sbjct: 83  TDHTLSRLIQAGIVQKLDKAKIPNLANLDPKLTARAAAYDADNAHSVIYEWGTNGLGINI 142

Query: 138 DML-----DKKSLKNWGDLWDAKWAGQLM-----LMDDAREVFHIALSKLGYSPNTTNPK 187
           D +         L ++  L+  ++A +L      ++D A EVF +A + LG  PN+T+PK
Sbjct: 143 DKVRAALGPDVKLDSFDLLFKPEYAEKLASCGIHVLDSAAEVFSVARNYLGLEPNSTDPK 202

Query: 188 EIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMARQE--------GAP 239
           +++ A      + P +  F+S    N    G++ +   ++G  + A+ +        G  
Sbjct: 203 DLEKATALWMGVRPYIQKFHSSEFINALANGDICVAFGYSGDIFQAQAQARAKEAANGVK 262

Query: 240 IQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGYPTPVKTAHD 299
           I  I P++GT+ W D +++PA A + E AHK IDF+L+P+ +A I+  + Y      A +
Sbjct: 263 IDYIIPKEGTLIWFDLMAVPADAPHPENAHKFIDFILQPQISADISNYVWYANANSKATE 322

Query: 300 LLPKEFANDPSIYPPQSVID 319
           LL +    +PSIYP Q V+D
Sbjct: 323 LLDEAVRTNPSIYPTQEVMD 342