Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  203 bits (516), Expect = 6e-57
 Identities = 113/333 (33%), Positives = 188/333 (56%), Gaps = 18/333 (5%)

Query: 4   KLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESM 63
           K+   AL  A +FT++ ++ ++ +  YNWS+YI  + L +F KETGIKVIY  ++SNE +
Sbjct: 6   KMTTLALVTAGVFTSSVVSAEEVVRVYNWSDYIAEDTLANFEKETGIKVIYDVFDSNEVV 65

Query: 64  YAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGNK 121
            AKL +  +GYD+VVPS  F++K  K G  Q++D S+L++ K+L+P  +   +  DP N+
Sbjct: 66  EAKLLSGRSGYDIVVPSNNFLAKQIKAGAFQKLDQSQLTNHKNLNPELMKQLETADPRNE 125

Query: 122 FSIPYIWGATGIGINTDML-----DKKSLKNWGDLWDAKWAGQL-----MLMDDAREVFH 171
            ++PY+WG TGIG N   +     +   + +   +++ K+A ++      L+D A E+  
Sbjct: 126 HAVPYLWGTTGIGYNEAKVKQVLGEDAPVDSLELIFNPKYAEKIAKCGFSLLDSADEMLP 185

Query: 172 IALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAY 231
           +A+  LG  PN+T  ++   A   + K+ P V  F+S         G++ +   ++G  +
Sbjct: 186 MAMIYLGLDPNSTKSEDYAKAGEVMAKIRPFVTYFHSSRYITDLANGDICVAFGYSGDVF 245

Query: 232 MA------RQEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIA 285
            A       + G  I    P++G+  W D ++IPA AKN++ AH  I++LLRPE  A I 
Sbjct: 246 QAAARAEEAENGNVIGYAIPKEGSNLWFDMLAIPADAKNVKNAHTFINYLLRPEVIAPIT 305

Query: 286 LEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVI 318
             + Y  P   A +L+ +E  ND +IYP   V+
Sbjct: 306 NYVAYANPNVPAQELVDEEIRNDAAIYPTPEVL 338