Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  213 bits (541), Expect = 8e-60
 Identities = 116/336 (34%), Positives = 192/336 (57%), Gaps = 19/336 (5%)

Query: 3   NKLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNES 62
           NK+   AL  A    + A+  ++ +  YNWS+YI  + LE+F KETGI+VIY  ++SNE 
Sbjct: 5   NKMTTLALVTAGTLASVAVQAEEVVRMYNWSDYIAEDTLENFKKETGIRVIYDVFDSNEV 64

Query: 63  MYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGN 120
           + AKL +  +GYD+VVPS +F++K  K G  + +D SKL++FK+L+ + +   +  DPGN
Sbjct: 65  VEAKLLSGRSGYDIVVPSNHFLAKQIKAGAFKPLDRSKLTNFKNLNADLMKLLEKADPGN 124

Query: 121 KFSIPYIWGATGIGINTDML------DKKSLKNWGDLWDAKWAGQL-----MLMDDAREV 169
           ++++PY+WG  GIG N + +      D     +   +++ K+A ++      ++D A ++
Sbjct: 125 QYAVPYLWGTNGIGYNINKVKAAVGEDAPPFNSMELIFNPKYAEKISKCGFAMLDSADDM 184

Query: 170 FHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGS 229
              A+  LG  PN+T  ++ + A   L+K+ P V  F+S    +    G++ +   ++G 
Sbjct: 185 VPQAMIYLGLDPNSTKAEDYEKAGELLEKIRPYVTYFHSSRYISDLANGDICVAYGFSGD 244

Query: 230 AYMARQ------EGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAK 283
            + A         G  I    P++G   W D ++IPA A N+E AHK+I++LLRPE  A 
Sbjct: 245 VFQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADATNVENAHKLINYLLRPEVIAP 304

Query: 284 IALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVID 319
           I+  + Y  P   A  L+ +   NDP+IYPP+ V+D
Sbjct: 305 ISNYVAYANPNDLAQPLVDEAIRNDPAIYPPKEVLD 340