Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., extracellular solute-binding protein (RefSeq) from Shewanella sp. ANA-3

 Score =  214 bits (544), Expect = 4e-60
 Identities = 117/335 (34%), Positives = 191/335 (57%), Gaps = 18/335 (5%)

Query: 3   NKLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNES 62
           NK+   AL  A    + A   ++ +  YNWS+YI  + LE+F KETGI+VIY  ++SNE 
Sbjct: 26  NKMTTLALVTAGALASVAAQAEEVVRVYNWSDYIAEDTLENFKKETGIRVIYDVFDSNEV 85

Query: 63  MYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGN 120
           + AKL +  +GYD+VVPS +F++K  K G  + +D SKLS+FK+L+ + +   +  DPGN
Sbjct: 86  LEAKLLSGRSGYDIVVPSNHFLAKQIKAGAFKPLDRSKLSNFKNLNADLMKQLEKADPGN 145

Query: 121 KFSIPYIWGATGIGINTDML-----DKKSLKNWGDLWDAKWAGQL-----MLMDDAREVF 170
           ++++PY+WG  GIG N D +     +     +   +++ K+A ++      ++D A ++ 
Sbjct: 146 QYAVPYLWGTNGIGYNIDKVKAAVGEDAPFDSMELIFNPKYAEKISKCGFAMLDSADDMV 205

Query: 171 HIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSA 230
             A+  LG  PN+T  ++ + A   L+K+ P V  F+S    +    G++ +   ++G  
Sbjct: 206 PQAMIYLGLDPNSTKAEDYEKAGELLEKIRPYVTYFHSSRYISDLANGDICVAFGFSGDV 265

Query: 231 YMARQ------EGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKI 284
           + A         G  I    P++G   W D ++IPA A N+E AHK+I++LLRPE  A I
Sbjct: 266 FQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADAANVENAHKLINYLLRPEVIAPI 325

Query: 285 ALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVID 319
           +  + Y  P   A  L+ +   NDP+IYPP+ V+D
Sbjct: 326 SNYVAYANPNDPAQPLVDEAIRNDPAIYPPKEVLD 360