Pairwise Alignments

Query, 458 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., amino acid carrier protein (RefSeq) from Shewanella loihica PV-4

 Score =  271 bits (694), Expect = 3e-77
 Identities = 156/447 (34%), Positives = 244/447 (54%), Gaps = 14/447 (3%)

Query: 1   MNNLQSFLQTVDSLVWGPPLLILLVGTGVYFTFRLGLLQFRRLPTALAMVF-GREKSSDK 59
           +N + S +  V+ ++WG  L+ +LV  GV FT RLG +Q R       +V  GREK++  
Sbjct: 6   LNLVDSTINAVNGMLWGSVLIYVLVAAGVLFTLRLGFIQLRMFGHGSKLVLQGREKTNG- 64

Query: 60  QGDVSSFAALCTALSATIGTGNIVGVATAIKLGGPGALFWMWLAALFGMATKYAECLLAV 119
              +SSF   CT+++A +GTGN+ GVA AI +GG GA+FWMWL AL GMAT + E  LA 
Sbjct: 65  ---ISSFQVFCTSMAARVGTGNMAGVAVAITVGGAGAVFWMWLIALLGMATAFIESTLAQ 121

Query: 120 KYRQIDDKGQMVGGPMYYLRDGVSSKTLAVLFAVFAVGVACFGIGTFPQVNAILDATQIS 179
            Y+  D  GQ  GGP YY+  G+  + +  LF+V  +    F      Q N + DA   +
Sbjct: 122 VYKVKDSDGQYRGGPAYYMEQGLGKRWMGSLFSVLLIIAFGFAFNA-AQANTMTDALNNA 180

Query: 180 FGVPREASAVVLTVLVAIVTIGGIQSIAKVAGKVVPAMALFYIIACLSVIVTNADKLADA 239
           FG+ +    +V+  + A +  GG++ +AK +  +VP MA+ Y+   L V+V N +++  A
Sbjct: 181 FGLDKTMVGLVIVAVAAYIISGGLKKVAKASELIVPVMAVAYLAIALIVLVMNLEQVPAA 240

Query: 240 VELVLVSAFTSTAATGGFLGASIMLAIQSGIARGVFSNESGLGSAPMAAAAA--KTDSCV 297
           +  ++ SAF    A GG +G     A+ +GIARG+FSNE+G+GSA   AA+A    +   
Sbjct: 241 LAYIVKSAFGWEEAAGGAMG-----AMMAGIARGLFSNEAGMGSAANIAASASPNPNHPA 295

Query: 298 EQGLISMTGTFFDTIIICTMTGLALILTGAWQSDLSGAAMTTYAFATGLNAQTIGPMLVS 357
            QG + M G F DTI+IC+ T   ++L+G   +      +     A            V+
Sbjct: 296 SQGFVQMIGVFVDTIVICSATAAIILLSGVLDAPGEQKGIGLLQLALTNEVGGWAAYFVA 355

Query: 358 IGLMFFAFTTILGWNYYGERCMVFLFGTKAVL-PYKIVFIGLIASGAFLHLDLIWIIADI 416
             ++ F F++I+    Y E  ++FL  +K VL  ++ + + ++ +G+   L L+W  AD+
Sbjct: 356 FAIILFCFSSIIANYSYAESNIMFLSRSKKVLYIFRALVLAMVMAGSVASLQLVWNFADV 415

Query: 417 VNGLMAIPNLIGLVALRHVVVEETKQY 443
             GLMA+ N+  +V L  V     K Y
Sbjct: 416 SMGLMALVNIAAIVMLSKVAFAVIKDY 442