Pairwise Alignments

Query, 458 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., sodium:alanine symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  270 bits (691), Expect = 6e-77
 Identities = 153/444 (34%), Positives = 246/444 (55%), Gaps = 9/444 (2%)

Query: 4   LQSFLQTVDSLVWGPPLLILLVGTGVYFTFRLGLLQFRRLPTALAMVFGREKSSDKQGDV 63
           L++ +  +++L+WG  L+  LVG G+YFT RL  +Q      +L ++    +  +    +
Sbjct: 2   LETIVNFLNALLWGKLLVYGLVGAGLYFTLRLVFIQLTHFKHSLKIMTMSRQGCES--GL 59

Query: 64  SSFAALCTALSATIGTGNIVGVATAIKLGGPGALFWMWLAALFGMATKYAECLLAVKYRQ 123
           SSF   CT+++A +G GN+ GVA AI   GPGA+FWMWL A+ GMAT   E  LA  Y+ 
Sbjct: 60  SSFQVFCTSMAARVGAGNMAGVAVAIGAAGPGAVFWMWLIAMLGMATAMVESTLAQVYKV 119

Query: 124 IDDKGQMVGGPMYYLRDGVSSKTLAVLFAVFAVGVACFGIGTFPQVNAILDATQISFGVP 183
            D  GQ  GGP YY+  G+  + + VLFA F + +A   +    Q N I  A +  FG  
Sbjct: 120 RDANGQFRGGPSYYMEKGLGQRWMGVLFAFFLI-IAFGLVFNAVQANTITGAMERVFGFD 178

Query: 184 REASAVVLTVLVAIVTIGGIQSIAKVAGKVVPAMALFYIIACLSVIVTNADKLADAVELV 243
                + L +    V +GG++ +A+V+  +VP MAL YI+    +++ N ++L   + L+
Sbjct: 179 PTYVGIGLVLASGFVIMGGLRKVARVSEFIVPIMALAYILIAFIIVLFNLEQLPAVISLI 238

Query: 244 LVSAFTSTAATGGFLGASIMLAIQSGIARGVFSNESGLGSAPMAAAAA--KTDSCVEQGL 301
           + SAF    A  G +  ++  A+Q+GIARG+FSNE+G+GSA   AA+A    +    QG 
Sbjct: 239 VKSAFGWQEAAAGGVAYTVAQAMQAGIARGLFSNEAGMGSAANVAASASPNPNHPASQGF 298

Query: 302 ISMTGTFFDTIIICTMTGLALILTGAWQSDLSGAAMTTYAFATGLNAQTIGPMLVSIGLM 361
           + M G F DTI+ICT T   ++L+G   S   G  +T  A +   +    G   +++ + 
Sbjct: 299 VQMMGVFVDTIVICTATAAIILLSGDIGSSDDGIRLTINAMSN--HVGDWGGAFIAVAIF 356

Query: 362 FFAFTTILGWNYYGERCMVFLFG--TKAVLPYKIVFIGLIASGAFLHLDLIWIIADIVNG 419
            F FT+I+    Y E  ++FL G  TKA+  +++  +G++  G+   + L+W +AD+  G
Sbjct: 357 LFCFTSIIANYSYAETNVMFLTGNSTKALPLFRLCVLGMVMFGSVAKISLVWNLADVSMG 416

Query: 420 LMAIPNLIGLVALRHVVVEETKQY 443
           LMA  N++ L+ L  + +     Y
Sbjct: 417 LMATVNIVALLLLSGLAIRVINDY 440