Pairwise Alignments

Query, 458 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., sodium:alanine symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  263 bits (672), Expect = 1e-74
 Identities = 166/471 (35%), Positives = 249/471 (52%), Gaps = 33/471 (7%)

Query: 4   LQSFLQTVDSLVWGPPLLILLVGTGVYFTFRLGLLQFRRLPTALAMVFGREKSSDKQGDV 63
           +   +  V+++VW P L+ L +G G++F+ R   LQ R LP  + ++F   KS+D    V
Sbjct: 1   MNEIVNAVNNIVWSPALVYLCLGVGLFFSLRSRFLQLRHLPEMIRLMFDG-KSTD--AGV 57

Query: 64  SSFAALCTALSATIGTGNIVGVATAIKLGGPGALFWMWLAALFGMATKYAECLLAVKYRQ 123
           SSF AL   L+  +GTGNI GVATAI  GGPGALFWMW+ A  G ++ + E  L   Y++
Sbjct: 58  SSFQALAMTLAGRVGTGNIAGVATAITFGGPGALFWMWMVAFLGASSAFVESTLGQVYKE 117

Query: 124 IDDKGQMVGGPMYYLRDGVSSKTLAVLFA---VFAVGVACFGIGTFPQVNAILDATQISF 180
               G+  GGP +Y+  G+  K  A  FA   +FA GV   G+    Q N+I  + + +F
Sbjct: 118 -KINGEYRGGPAFYIEKGLGMKWYAWTFAIATIFACGVLLPGV----QANSIGASLKTAF 172

Query: 181 GVPREASAVVLTVLVAIVTIGGIQSIAKVAGKVVPAMALFYIIACLSVIVTNADKLADAV 240
            +    +A VL +L+  +  GG++ IA  A  VVP MAL YII    +I  N D+L   +
Sbjct: 173 DIDPNVTAAVLAMLLGFIIFGGVKRIANFATLVVPFMALGYIIVACVIIALNIDQLPGIL 232

Query: 241 ELVLVSAFTSTAATGGFLGASIMLAIQSGIARGVFSNESGLGSAPMAAAAAKTDSCVEQG 300
            L++ SAF   A  G  LG    LAI  G+ RGV+SNE+G G+ P A++AA      +QG
Sbjct: 233 WLIIKSAFGFDAGFGAILG----LAIMWGVKRGVYSNEAGQGTGPHASSAAAVTHPAKQG 288

Query: 301 LISMTGTFFDTIIICTMTGLALILTG----------AWQSDLSGAAMTTYAFATGLNAQT 350
           L+     + DT+ +C+ TG  L++TG          A  + ++G A  +    T + +  
Sbjct: 289 LVQAFSVYIDTLFVCSATGFMLLITGLYNVQGPDGAALYTGIAGVAAGSGYVQTAMESMM 348

Query: 351 --IGPMLVSIGLMFFAFTTILGWNYYGERCMVFLFGTKAVLPY-----KIVFIGLIASGA 403
              G M V+I L FFAFTTI+ + Y  E  + ++   K   P+     K++ +     G 
Sbjct: 349 PGFGNMFVAIALFFFAFTTIVAYYYIAETNIAYI-NRKVNRPWLTVMLKVIIMASTVYGT 407

Query: 404 FLHLDLIWIIADIVNGLMAIPNLIGLVALRHVVVEETKQYFAARYQYSEAE 454
               DL W + DI  G+MA  N+I ++ L+ V     K Y + + Q  E +
Sbjct: 408 VKTADLAWGMGDIGVGIMAWLNIIAIILLQKVAFTCLKDYESQQKQGIEPQ 458