Pairwise Alignments

Query, 458 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., amino acid carrier protein (RefSeq) from Shewanella sp. ANA-3

 Score =  559 bits (1440), Expect = e-164
 Identities = 280/442 (63%), Positives = 353/442 (79%), Gaps = 4/442 (0%)

Query: 3   NLQSFLQTVDSLVWGPPLLILLVGTGVYFTFRLGLLQFRRLPTALAMVFGREKSSDKQGD 62
           + Q+ L +++ +VWGP  L LLVGTG+Y T RL L+Q  RLP AL ++F   K +   GD
Sbjct: 2   SFQALLSSLNGIVWGPVTLCLLVGTGIYLTLRLRLIQVFRLPMALGLLF---KPAKGHGD 58

Query: 63  VSSFAALCTALSATIGTGNIVGVATAIKLGGPGALFWMWLAALFGMATKYAECLLAVKYR 122
           +SSFAALCTALSATIGTGNIVGVATAIK+GGPGALFWMWLAA FGMATKYAEC+LAVKYR
Sbjct: 59  LSSFAALCTALSATIGTGNIVGVATAIKMGGPGALFWMWLAAFFGMATKYAECMLAVKYR 118

Query: 123 QIDDKGQMVGGPMYYLRDGVSSKTLAVLFAVFAVGVACFGIGTFPQVNAILDATQISFGV 182
             D +GQ+ GGPMYY+  G+    +A LFA+F VGVA FGIGTF QVNAI DA  I+F V
Sbjct: 119 TTDARGQIAGGPMYYIERGLGLHWMAKLFALFGVGVAFFGIGTFAQVNAISDALTIAFEV 178

Query: 183 PREASAVVLTVLVAIVTIGGIQSIAKVAGKVVPAMALFYIIACLSVIVTNADKLADAVEL 242
           P  A+A+VLT+LVA VT+GG++ I+ VA K+VPAM++ Y++AC+ ++V+ A+ +  A++L
Sbjct: 179 PTWATALVLTLLVAAVTLGGVKRISNVAQKLVPAMSIGYVLACVWILVSFAESILPALQL 238

Query: 243 VLVSAFTSTAATGGFLGASIMLAIQSGIARGVFSNESGLGSAPMAAAAAKTDSCVEQGLI 302
           V+ SAFT  +A GGFLGA++  AIQ GIARGVFSNESGLGSAP+AAAAAKT+  VEQGL+
Sbjct: 239 VVESAFTPVSAAGGFLGATVAQAIQMGIARGVFSNESGLGSAPIAAAAAKTNEPVEQGLV 298

Query: 303 SMTGTFFDTIIICTMTGLALILTGAWQSDLSGAAMTTYAFATGLNAQTIGPMLVSIGLMF 362
           SMTGTFFDTIIICT+TGL LI+TG W  D +GAAMT+ AF+ G +A  IG  LV+I L+ 
Sbjct: 299 SMTGTFFDTIIICTITGLVLIITGVWSGDTAGAAMTSAAFSLGGSA-AIGQYLVTIALVC 357

Query: 363 FAFTTILGWNYYGERCMVFLFGTKAVLPYKIVFIGLIASGAFLHLDLIWIIADIVNGLMA 422
           FAFTTILGW+YYGERC  +L G + +  Y+++F+GLIA GAF+ LD+IW++AD VNGLMA
Sbjct: 358 FAFTTILGWHYYGERCWYYLVGERGLRAYQMLFLGLIAVGAFIKLDVIWLLADTVNGLMA 417

Query: 423 IPNLIGLVALRHVVVEETKQYF 444
           IPNLI ++ LRHV++ ET+ YF
Sbjct: 418 IPNLIAIIGLRHVIIAETQSYF 439