Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  311 bits (797), Expect = 1e-88
 Identities = 199/597 (33%), Positives = 293/597 (49%), Gaps = 71/597 (11%)

Query: 98  YQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRDGVQREFCVQYR 157
           YQL L P L  LSL  N+R+FQ     +I++ + +  G  D+   L      RE+CVQY 
Sbjct: 91  YQLLLRPWLWWLSLASNNRVFQNLATSDIVTTIFKAHGFTDFQLKLTGSYTPREYCVQYS 150

Query: 158 ESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLPEPIPYNALVGGAIDTPYI 217
           E+D+ F+ RL  EEG+ + F HE G HTL  +D++D+ + +P     N L G  I    +
Sbjct: 151 ETDLAFVSRLLEEEGIFWFFTHEEGTHTLVLADSNDAFAPIPNGPTVNYL-GQRIGEREL 209

Query: 218 HGLTYRT---QAEVSEVQLKDYSFKKPA---YSFLQTVQGTELDYQQTRYQHFDAPGRYK 271
           HG+       QA     Q  DY F  P    YS  + V G    Y+         PG Y 
Sbjct: 210 HGIRSGQVCLQAVAGVYQATDYEFTTPTTSLYSQAEAVAGPSSVYEH--------PGGYT 261

Query: 272 DDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVSINHQ 331
               G A ++ R+D LR       G+S+   L  GY F L  H D  +N DWVV S++H+
Sbjct: 262 AKAQGDALTKQRVDGLRSQEQRFVGESDCRWLVPGYWFTLAGHEDTTLNIDWVVTSVSHE 321

Query: 332 GEQPQALQEDGGSGATTYSNQFSLIPGHLHWRAEP-QPKPQVDGPMIATVVGPEGEEIFC 390
                           +Y N+F  IP    +R     PKP++     A VVG  GEEI+ 
Sbjct: 322 ASHD------------SYRNRFEAIPKATVYRPPRLTPKPRMY-TQTALVVGKAGEEIWT 368

Query: 391 DEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQ 450
           DE+GR+K+ FPWDR    +E SSCWVRV   W+G  +G   +PRIG EVIV F++GDPD+
Sbjct: 369 DEYGRIKLQFPWDRTGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDR 428

Query: 451 PIITGRTYHATNTPPYTLPEHKTKTVLRTETHQ-GEGFNELSFEDQAGKEQIYLHAQKDF 509
           P++TG  Y+  N  PY LP ++T++ ++T++ + G GFNEL FED+   E+++L AQKDF
Sbjct: 429 PLVTGCVYNGDNALPYALPANQTQSGIKTQSSKGGGGFNELRFEDKKDAEEVFLQAQKDF 488

Query: 510 DGLIENDHTTVIRHDHHLTVENDQFTQIKH-NQHLTVEWESREA---------------- 552
           +  + ND T  + HD  LTV+N +   +K  ++ +T+E   R                  
Sbjct: 489 NINVLNDTTATVGHDETLTVQNARTRTVKDGDETVTLEKGKRSVTIQTGSDSLDVKDTRT 548

Query: 553 ------------------VTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEAG 594
                             VTG   L+++G+L +K       ++G    +K+G  + ++A 
Sbjct: 549 VTVGSDQTHSTGGNYEHKVTGNYSLTVDGNLTIKVSGTLTLQSGGSFAIKSGADLAVQAS 608

Query: 595 SEITVKAGGSFVKVDPAGVHLSGALVNLNSGG------SAGSGSGFGGAMPALPGGL 645
           + I+ KAG +        +         N  G      +A   +  GG M  + GGL
Sbjct: 609 TSISQKAGTALSNQAGTSLENKAGTTLTNDAGISLVNKAAAEQTVDGGGMLTIKGGL 665