Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  134 bits (338), Expect = 1e-35
 Identities = 130/458 (28%), Positives = 198/458 (43%), Gaps = 47/458 (10%)

Query: 18  LVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQLVQ 77
           L V  F G+E+L+           +R++++L      +  + ++   A L+L   S    
Sbjct: 20  LQVLRFSGREALNQP---------YRFDLELIGLAPPIDLQLLLGHPAFLRLEGESG--- 67

Query: 78  RVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQE--MG 135
            VHGIV + S   +      Y++TLVP L++L      R+F + +V ++L  LL+E  + 
Sbjct: 68  -VHGIVHSVSLSALAPRRIGYRVTLVPYLQQLEQGPQRRVFHRLSVVQLLQRLLEEHALP 126

Query: 136 INDYAFALKRDGVQ-REFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDS 194
           ++ Y F L       R FC+QY ESD+  L RL  EEG+ Y F H    H L F++   S
Sbjct: 127 VDSYRFELPHGLYPCRPFCIQYDESDLTLLQRLCEEEGIHYHFEHAPQGHVLVFAEDPKS 186

Query: 195 LSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTE- 253
               P  +P   L       P I  L  R    +  + +       P        Q  E 
Sbjct: 187 FPARPIELP---LRPNDSLQPAIRRLYLRHHPMMPGLPVGFSDRAPPEAEASAANQPLER 243

Query: 254 LDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQE 313
           LD++  R     A  RY+         +  L+ LR       G S +P L  G    + E
Sbjct: 244 LDHEAMRGNPALA-HRYQ-------AGRRHLERLRCRQREIHGHSTQPALHGGDIVQVCE 295

Query: 314 HLDPAMNRDWVVVSINHQGEQPQALQED--GGSGATTYSNQFSLIPGHLHWR-AEPQPKP 370
           H     N  W++  + H+G Q   L+ D      A  Y N+F+ IP    +R A   PKP
Sbjct: 296 HPVSTFNDQWLITEVQHRGRQFSILEPDLPAAPSARDYRNRFTAIPWSTTFRPALKHPKP 355

Query: 371 QVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFI 430
            V G  +A V+G  G+    DE G+V +   W       +Q    + VS+         +
Sbjct: 356 PVPGYHLAHVLGSTGQPASPDERGQVSVSL-W-----APDQDGITLPVSRLTLDGSPSLM 409

Query: 431 AIPRIGHEVIVEFLNGDPDQPII------TGRTYHATN 462
           A    G EV+V FL+GDPD+P++      TG  + AT+
Sbjct: 410 A----GSEVLVSFLDGDPDRPVLCPGAIDTGAGHSATS 443