Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 741 a.a., type VI secretion protein ImpA from Pseudomonas fluorescens FW300-N2C3

 Score =  315 bits (807), Expect = 8e-90
 Identities = 189/592 (31%), Positives = 303/592 (51%), Gaps = 19/592 (3%)

Query: 27  ESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQLVQRVHGIVRAF 86
           +S+  S  LG+    F YE+ L S    +T +Q++ K   L L       +  HGIV + 
Sbjct: 24  QSMDGSEELGRL---FHYELDLTSEDRAITFDQLLGKPMGLTLELYDGAKRYFHGIVCSC 80

Query: 87  SQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRD 146
            Q         Y+++L P    L+   + RIFQ +TVP+I+  + +++G +D+  +L   
Sbjct: 81  RQLTGHGQFAGYRVSLRPWFWLLTRTSDCRIFQNKTVPDIIKQVFRDLGFSDFEDSLSGS 140

Query: 147 GVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLPE--PIPY 204
             + E+CVQYRE+  DF+ RL  +EG+ Y F HE  +H L  +DA  + S   +   +P+
Sbjct: 141 YREWEYCVQYRETSFDFVSRLMEQEGIYYYFRHEKNRHVLVLADAYGAHSTAADYASVPF 200

Query: 205 NALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHF 264
                   +  + +      + +   + L DY F +P  S L+       ++    Y  +
Sbjct: 201 YPPDRQMRERDHFYDWQLAREVQPGSLALNDYDFLRPRAS-LEVRSSVPRNHTNADYPLY 259

Query: 265 DAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWV 324
           D PG Y    +G  +++ R++ +         +     +  G+ F L  +     NR+++
Sbjct: 260 DYPGEYVQSNDGDHYARTRIEAIHSQFERVQLRGRARGIGCGHVFSLTGYDRADQNREYL 319

Query: 325 VVSINHQGEQPQALQEDGGSGATTYSNQFSLIPGHLHWRAEP-QPKPQVDGPMIATVVGP 383
           VV+  +Q  Q  A +      A  + ++   +  +  +R  P  P P V GP  A VVGP
Sbjct: 320 VVAARYQIRQ-DAYESGQSDVAEQFVSELDCMDANQAFRPLPLTPMPIVRGPQTAVVVGP 378

Query: 384 EGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVEF 443
            GEEI+ D++GRVK+HF WDR+   NE SSCW+RVSQ WAG  +G + +PRIG EVIV F
Sbjct: 379 SGEEIWTDQYGRVKVHFHWDRHDQSNENSSCWIRVSQAWAGKNWGSVQLPRIGQEVIVSF 438

Query: 444 LNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQG---EGFNELSFEDQAGKEQ 500
           L GDPD+PIITGR Y+A  T PY LP + T++ +++ + +G     FNE+  ED+ G EQ
Sbjct: 439 LEGDPDRPIITGRVYNAEQTVPYGLPANATQSGVKSRSSKGGSPANFNEIRMEDKKGAEQ 498

Query: 501 IYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQFTQIKH--------NQHLTVEWESREA 552
           +++HA+K+ D  +END T  + HD   T++ND+   +KH        N+ +T+  + +E 
Sbjct: 499 LFIHAEKNQDIEVENDETHWVGHDRRKTIDNDETVHVKHDRTETVDNNETITIGVDRKEK 558

Query: 553 VTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEAGSEITVKAGGS 604
           V   + +SI  +     G       G     K G    I  G++ T K G +
Sbjct: 559 VGNNETISIGVNRTEDVGSDEKITIGANRTEKVGSNETITIGADRTEKVGAN 610