Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens FW300-N2E3

 Score =  310 bits (793), Expect = 3e-88
 Identities = 205/604 (33%), Positives = 302/604 (50%), Gaps = 85/604 (14%)

Query: 98  YQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRDGVQREFCVQYR 157
           YQL L P L  L+L  N+R+FQ     +I++ + +  G  D+   L      RE+CVQY 
Sbjct: 91  YQLVLRPWLWWLTLASNNRVFQNLATSDIVTTIFKAHGFTDFQLKLTGSYTPREYCVQYG 150

Query: 158 ESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLPEPIPYNALVGGAIDTPYI 217
           E+D  F+ RL  EEG+ + F HE GKHTL   D++D+   +P   P    +G  +    +
Sbjct: 151 ETDFAFVSRLLEEEGIFWFFTHEDGKHTLMLGDSNDAFVPIPNG-PKVTYLGQRMGEREL 209

Query: 218 HGLTYR---TQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRYKDDV 274
           HG+       QA     +  DY F  P+ S     Q   +   ++ Y+H   PG Y    
Sbjct: 210 HGIRSGQVCVQAVAGVYRATDYEFTTPSTSLYG--QAEAVAGPRSIYEH---PGGYNAKA 264

Query: 275 NGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQ 334
            G A ++ R+D LR       G+S+   L  G+ F L  H DP +N DWVV ++ H+   
Sbjct: 265 RGDALTKQRVDGLRSQEKRFVGESDCRWLVPGHWFTLAGHDDPTLNIDWVVTAVTHEASH 324

Query: 335 PQALQEDGGSGATTYSNQFSLIPGHLHWR-AEPQPKPQVDGPMIATVVGPEGEEIFCDEH 393
                        +Y N+F  IP    +R A   PKP++     A VVG  GEEI+ D++
Sbjct: 325 D------------SYRNRFDAIPKATPYRPARITPKPRMH-TQTALVVGKSGEEIWTDQY 371

Query: 394 GRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPII 453
           GR+K+ FPWDR    +E SSCWVRV   W+G  +G   +PRIG EVIV F++GDPD+P++
Sbjct: 372 GRIKLQFPWDRDGKNDESSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDRPLV 431

Query: 454 TGRTYHATNTPPYTLPEHKTKTVLRTETHQ-GEGFNELSFEDQAGKEQIYLHAQKDFDGL 512
           TG  Y+  N  PY LP ++T++ ++T + + G+GFNEL FED+   E+++L AQKDF   
Sbjct: 432 TGCVYNGDNALPYALPANQTQSGIKTHSSKGGDGFNELRFEDKKDAEEVFLQAQKDFKIN 491

Query: 513 IENDHTTVIRHDHHLTVENDQFTQIKH-NQHLTVEWESREA------------------- 552
           + ND T  + HD  LTV+N +   +K  ++ +T+E   R                     
Sbjct: 492 VLNDTTASVGHDEILTVKNARTRTVKEGDETVTLEKGKRSVTIQTGSDSLDVKDSRTVKV 551

Query: 553 ---------------VTGEQVLSIEGSL----------------HVKTGKVWVNEAGTEI 581
                          VTG+  L+++G+L                 +K+G     +A T I
Sbjct: 552 GADQKHSTGGNYEHKVTGDYSLTVDGNLTIKVSGTLTLQSGGSFAIKSGADLAAQASTSI 611

Query: 582 HVKAGQKVVIEAGSEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFGGAMPAL 641
             KAG  +  +AG+E+T KAG S    + AGV L+      N GG+  +    GG M  +
Sbjct: 612 SQKAGTSLSNQAGTELTNKAGTSL--TNDAGVSLT------NKGGAEQTVD--GGGMLTI 661

Query: 642 PGGL 645
            GGL
Sbjct: 662 KGGL 665