Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens FW300-N2E3

 Score =  458 bits (1178), Expect = e-133
 Identities = 269/696 (38%), Positives = 388/696 (55%), Gaps = 34/696 (4%)

Query: 6   YSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRA 65
           +++ VEGL ++ L V    G+E++S           F+++V+L S   +L  E ++ K A
Sbjct: 10  FALTVEGLAND-LQVLALTGREAISQP---------FQFDVELVSENPSLDLESLLHKPA 59

Query: 66  ELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPE 125
            L+L +N      +HG +   +QGD G   T Y +TL P L  L+ R N RIFQ  +VP+
Sbjct: 60  FLQLAQNGT---GIHGQIYRVAQGDTGKRLTRYSVTLRPQLSYLAHRINQRIFQNLSVPK 116

Query: 126 ILSILLQEMGINDYAFALKRDGV--QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGK 183
           I+  +L+E GI   A+  K   +  +R +CVQY ESD+ F+ RL  EEG+ + F H A  
Sbjct: 117 IIGQVLEEHGIQSNAYEFKVGAIYPERVYCVQYDESDLHFIQRLCEEEGIHFHFQHSATA 176

Query: 184 HTLYFSDASDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAY 243
           H L F D      KL  P+ Y    G   + P I     R +   S    +DY F+KP  
Sbjct: 177 HKLVFGDDQTVFPKLA-PVAYQQDSGMLANDPVIKRFDLRLETRTSRTTRRDYDFEKPRI 235

Query: 244 SFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLL 303
           +     +G      +   + +D PGR+ D   G   ++  L+  R     A G+S++PLL
Sbjct: 236 TLESEARGDA----KPDLEDYDYPGRFIDRERGKHLAKRSLERHRSDYQLAEGKSDQPLL 291

Query: 304 RAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEDGGSGATT--------YSNQFSL 355
            +GY   L +H  P  N  W++  I H+G+QPQ L+E   S  T         Y N+F  
Sbjct: 292 VSGYFLALSQHPKPKWNDLWLLTEILHEGKQPQVLEESVTSNTTDLKDDFHQGYRNRFQA 351

Query: 356 IPGHLHWRAE-PQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSC 414
            P  +  R     PKP++ G   A V GP+GEEI CD++ RVK+ F WDR    ++++SC
Sbjct: 352 TPWDVPNRPPLVHPKPRILGSQSAVVTGPKGEEIHCDQYRRVKVQFHWDRIGTADDKTSC 411

Query: 415 WVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTK 474
           W+RVS  WAG+ YG IAIPRIG EV+V FL GDPDQP+I+G  YH  N  PY LP +KT+
Sbjct: 412 WLRVSSAWAGAHYGGIAIPRIGMEVLVTFLEGDPDQPLISGCLYHKENVVPYDLPANKTR 471

Query: 475 TVLRT-ETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQ 533
           +  ++  +  G G+NEL  ED+ G+EQI+LHAQ+D+D  IE+D    + ++ H TVE + 
Sbjct: 472 STFKSLSSPGGGGYNELRIEDKKGQEQIFLHAQRDWDENIEHDQKIRVGNERHDTVEANS 531

Query: 534 FTQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEA 593
           +++ K  +H TV  + +        L++  + H+K G     EAG EIH+ +G KVV+EA
Sbjct: 532 YSEFKAEEHHTVHKDRKVETRANDHLTVGVNQHIKIGTGQFIEAGQEIHLSSGLKVVLEA 591

Query: 594 GSEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFGGAMPALPGGLEPAVALAP 653
           GSE+T+K GGSF+K+D  GV LSG  +N+NSGGS GSG+   GA P LPG L+ A A   
Sbjct: 592 GSELTLKGGGSFIKIDAGGVTLSGPAINMNSGGSPGSGT---GAAPILPGPLKQADADKA 648

Query: 654 PQTISYQALLQAEQANVPAVKVCPLAAQEATPAVNS 689
            Q +   A  QA     P  ++C  AA+E     N+
Sbjct: 649 GQLL-VPAQRQALMRGTPRCEICEQAAKEPAAKENA 683