Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens FW300-N2E3

 Score =  465 bits (1196), Expect = e-135
 Identities = 267/698 (38%), Positives = 387/698 (55%), Gaps = 29/698 (4%)

Query: 6   YSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRA 65
           +S+ V   + + L V  F G E +S +         FR++++L S   +L  E ++ K+A
Sbjct: 10  FSLTVADFQGD-LHVLSFTGTEGISQT---------FRFDLELVSENHDLDLETLLHKQA 59

Query: 66  ELKLYRNSQLV--QRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTV 123
            L     S       +HG +   +QGD G     Y+++LVP LE L  R N RI+Q+ + 
Sbjct: 60  FLAFDAASSKGGGSGIHGQIYRVAQGDAGKRLARYKVSLVPQLEYLRHRTNQRIYQQMSA 119

Query: 124 PEILSILLQEMGI--NDYAFALKRDGVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEA 181
           P+I++++L+E GI  N Y+F L +    RE+CVQY E+D+ F+ RL  EEG+ Y F H A
Sbjct: 120 PKIIALILEEHGIKGNAYSFQLSQPCPDREYCVQYDETDLHFVQRLCEEEGIHYHFQHSA 179

Query: 182 GKHTLYFSDASDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKP 241
             H L F D      KL +P  Y    G   D   I G T R +   S    +DY F+KP
Sbjct: 180 SGHQLVFGDDQTVFPKLGQPTAYVQGSGMVADEAVIKGFTLRLETRTSRTTRRDYDFEKP 239

Query: 242 AYSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEP 301
               L+     +    +   + +D PGR+ +   G   SQ  L+  R     A G  ++ 
Sbjct: 240 RLQ-LEAAYKPDGKRDEPDLEDYDYPGRFTERPRGKFLSQRALERHRADYQQAEGHGDQT 298

Query: 302 LLRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEDGGSGATT--------YSNQF 353
            L +G+  ++ +H     N  W++  + H+G+QPQ L+E   S  T         Y N+F
Sbjct: 299 ALVSGHFLEISDHPRSEWNDLWLLTEVIHEGKQPQVLEESVTSDTTANKDDFHQGYRNRF 358

Query: 354 SLIPGHLHWR-AEPQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQS 412
              P  + +R A   PKP+V G   A V GP+GEEI CD++GRVK+ F WDR    ++++
Sbjct: 359 LATPWDVFYRPALLHPKPRVLGSQTAQVTGPKGEEIHCDQYGRVKVQFHWDRIGVADDKT 418

Query: 413 SCWVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHK 472
           SCW+RVS  WAG +YG IAIPR+G EV+V FL GDPDQP++TG  YH  N  PY LP +K
Sbjct: 419 SCWLRVSSSWAGDRYGAIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKENQVPYALPANK 478

Query: 473 TKTVLRT-ETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVEN 531
           T++V +T  +  G GFNEL  ED+ G EQI++HAQ+D+D  IE+D    + ++ H TVE 
Sbjct: 479 TRSVFKTLSSPGGGGFNELRIEDKKGAEQIFIHAQRDWDENIEHDQKIRVGNERHDTVEK 538

Query: 532 DQFTQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVI 591
           + +T++K  +H T   + +     +  L+I  S H+K G   +   G EIH+KAG K+VI
Sbjct: 539 NTYTELKAEEHRTTLADRKVEARMDDHLTIGQSQHIKIGTAQLTSVGREIHLKAGDKMVI 598

Query: 592 EAGSEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFGGAMPALPGGLEPAVAL 651
           EAGSE+T+K GGSF+K+D  GV + G LV +N+GG AGSG+G G   P LPG  +  +A 
Sbjct: 599 EAGSELTIKGGGSFIKLDAGGVTVVGPLVKINAGGLAGSGTGIGIKPPRLPGAADKDLAG 658

Query: 652 APPQTISYQALLQAEQANVPAVKVCPLAAQEATPAVNS 689
           APP     QAL        P  K C   A+  + A+ +
Sbjct: 659 APP----VQALGNTPIPPPPVCKECLARAKRNSQALTA 692