Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., Rhs element Vgr protein from Pseudomonas stutzeri RCH2

 Score =  461 bits (1185), Expect = e-133
 Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 27/652 (4%)

Query: 6   YSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRA 65
           +S+ +EG++ +  V+  F G+E++S           +R++++L S   +L  + ++ K A
Sbjct: 10  FSMTLEGVDHDFQVLE-FRGREAISQP---------YRFDLELVSERPDLDLQALLHKPA 59

Query: 66  ELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPE 125
            L           +HG+V   +QG+ G   T Y+LTLVP L  L+ R N RIFQ  +VP+
Sbjct: 60  FLTF---DPAGMGIHGLVHRIAQGESGKRLTRYRLTLVPQLAYLAHRTNQRIFQHLSVPQ 116

Query: 126 ILSILLQEMGINDYAFALKRDGV---QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAG 182
           I++ +L+E GI   A+  +   V    RE+CVQY ESD+ F+ RL  EEG+ Y F H   
Sbjct: 117 IIAQVLEEHGIQADAYRFQLGPVLYPPREYCVQYDESDLHFVQRLCEEEGIHYHFEHSTR 176

Query: 183 KHTLYFSDASDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPA 242
            H L F D   S ++L +P  Y    G   D P I     R     S V  +DY F++P 
Sbjct: 177 GHVLVFGDGQTSFARLGQPTAYLQDNGMTADEPVIKRFAVRVATRTSRVGRRDYDFEQPR 236

Query: 243 YSFLQTVQGTELD--YQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNE 300
                T +G        Q   + +D PGR+ +   G   SQ  L+  R     A G S++
Sbjct: 237 LLMEATHRGEPAANAMPQPDLEDYDYPGRFTERARGKHLSQRALERHRHDYRLAEGNSDQ 296

Query: 301 PLLRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEDGGSGATT-------YSNQF 353
           P L +G+  ++ +H     N  W++  + H+G+QPQ L+E   S   T       Y N F
Sbjct: 297 PRLVSGHLLEISDHPRREWNDLWLLTEVLHEGKQPQVLEESVTSHVETGDGFIQGYRNHF 356

Query: 354 SLIPGHLHWR-AEPQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQS 412
           +  P  + +R A   PKP+V G   A V GP GEEI CDE+GRV++ F WDR    ++++
Sbjct: 357 TATPWDIPFRPALRHPKPKVLGSQTAVVTGPAGEEIHCDEYGRVRVQFHWDREGQADDKT 416

Query: 413 SCWVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHK 472
           SCW+RVS  WAG +YG IAIPR+G EV+V FL GDPDQP++TG  YH  +  PY LP +K
Sbjct: 417 SCWLRVSSSWAGDRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKEHQVPYDLPANK 476

Query: 473 TKTVLRT-ETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVEN 531
           T+TV +T  +  G G+NEL  ED+ G+EQIY+HAQ+D+D  IE+D  + + ++ H TV+ 
Sbjct: 477 TRTVFKTLSSPGGGGYNELRIEDRKGQEQIYIHAQRDWDENIEHDQKSRVGNERHDTVDA 536

Query: 532 DQFTQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVI 591
           + +++ +  +H TV  + +  V  +  L+I  + H+K G   + +AG EIH+KAGQK+VI
Sbjct: 537 NSYSEFRAEEHQTVAGDRKVEVKPDDHLTIGQTQHIKLGTAQLTKAGREIHLKAGQKMVI 596

Query: 592 EAGSEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFGGAMPALPG 643
           EAG E+T+KAGGSF+K+DP G+ +SG L  +N+GG+ G GSG     P LPG
Sbjct: 597 EAGVELTLKAGGSFIKLDPGGITVSGPLARINAGGAPGKGSGIKIKPPVLPG 648