Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., Rhs element Vgr protein from Pseudomonas stutzeri RCH2

 Score =  455 bits (1171), Expect = e-132
 Identities = 263/671 (39%), Positives = 388/671 (57%), Gaps = 35/671 (5%)

Query: 6   YSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRA 65
           +++ +EG+E +  V+    G+E++S           +R++++L S  S+L  E ++ + A
Sbjct: 10  FTLSLEGIEHDFKVLE-LQGREAISQP---------YRFDLELVSERSDLDLESLLHRPA 59

Query: 66  ELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPE 125
            L L   + +   +HG+V   +QG+ G   T Y+LTLVP L  L+ R N RIFQ  TVP+
Sbjct: 60  FLAL---APVGSGIHGLVHQAAQGESGQRLTRYRLTLVPQLAYLAHRINQRIFQHLTVPQ 116

Query: 126 ILSILLQEMGINDYAFALKRDGV---QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAG 182
           I++ +L+E GI   A+  +   V    RE+CVQY E+D+ F+ RL  EEG+ Y F H A 
Sbjct: 117 IIAQVLEEHGIQADAYRFQLGPVIYPAREYCVQYDETDLHFIQRLCEEEGIHYHFQHGAS 176

Query: 183 KHTLYFSDASDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPA 242
            H L F D     ++L     Y    G   D P I     R +   S V  +DY F+KP 
Sbjct: 177 GHVLVFGDDQTVFARLAATA-YQQDSGLVADQPVIKRFGLRLETRPSHVTRRDYDFEKPR 235

Query: 243 YSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPL 302
            S          D+Q    + +D PGR+ +   G   SQ  L+  R     A G+S++P 
Sbjct: 236 LSMEAAFHS---DFQPD-LEDYDYPGRFTERARGKHLSQRALERHRHDYELAEGESDQPQ 291

Query: 303 LRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEDGGSGATT-------YSNQFSL 355
           L +G+   L EH     N+ W++  + H+G+QPQ L+E   S + +       Y N F+ 
Sbjct: 292 LASGHFLPLGEHPRSDWNQLWLLTEVLHEGKQPQVLEESVTSDSQSRDGFTQGYRNHFTA 351

Query: 356 IPGHLHWR-AEPQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSC 414
            P  + +R A   PKP+V G   A V GP GEEI CDE+GRV++ F WDR    ++++SC
Sbjct: 352 TPWDIPFRPALRHPKPKVLGSQTAVVTGPAGEEIHCDEYGRVRVQFHWDREGQADDKTSC 411

Query: 415 WVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTK 474
           W+RVS  WAG +YG IAIPR+G EV+V FL GDPDQP++TG  YH  +  PY LP +KT+
Sbjct: 412 WLRVSSSWAGDRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKEHQVPYDLPANKTR 471

Query: 475 TVLRT-ETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQ 533
           TVL+T  +  G G+NEL  ED+ G+EQIY+HAQ+D+D  IE+D    + H+ H TV+ + 
Sbjct: 472 TVLKTLSSPGGGGYNELRIEDRKGQEQIYIHAQRDWDENIEHDQKVRVGHERHDTVDANS 531

Query: 534 FTQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEA 593
           +++ +  +H T   + +  +     L++  S  +K G     EAG EIH+ +G KVV+EA
Sbjct: 532 YSEYRAEEHRTTHADRKTEIRANDHLTVGNSQQLKIGTGQFVEAGQEIHLSSGLKVVLEA 591

Query: 594 GSEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFGGAMPALPGGLEPAVALAP 653
           GSE+T KAGGSF+K+D +G+ + G L+ +NSGGS G+GS   GA P LPG ++ A A  P
Sbjct: 592 GSELTFKAGGSFIKLDASGITMVGPLIRMNSGGSPGNGS---GAAPILPGQVKAADADVP 648

Query: 654 PQTISYQALLQ 664
              IS +AL++
Sbjct: 649 --GISLEALVK 657