Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 699 a.a., Rhs element Vgr protein from Pseudomonas stutzeri RCH2

 Score =  465 bits (1197), Expect = e-135
 Identities = 275/690 (39%), Positives = 387/690 (56%), Gaps = 33/690 (4%)

Query: 6   YSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRA 65
           +++ +EG+E +  V+  F G+E++S           +R++++L S  S+L  E ++ + A
Sbjct: 10  FTLSLEGVEHDFKVLE-FQGREAISQP---------YRFDLELVSERSDLDLESLLHRPA 59

Query: 66  ELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPE 125
            L L  +      +HG+V   +QG+ G   T Y+LTLVP L  L+ R N RIFQ  TVP+
Sbjct: 60  FLALAPDGS---GIHGLVHQAAQGESGQRLTRYRLTLVPQLAYLAHRTNQRIFQHLTVPQ 116

Query: 126 ILSILLQEMGINDYAFALKRDGV---QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAG 182
           I++ +L+E GI   A+  +   V    RE+CVQY ESD+ F+ RL  EEG+ Y F H A 
Sbjct: 117 IIAQVLEEHGIQADAYRFQLGPVIYPPREYCVQYDESDLHFIQRLCEEEGIHYHFQHSAA 176

Query: 183 KHTLYFSDASDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPA 242
            H L F D      +L     Y    G   D P I     R +   S V  +DY F+KP 
Sbjct: 177 GHALVFGDDQTVFPRLAATA-YQQDSGLVADQPVIKRFGLRLETRTSRVTRRDYDFEKPR 235

Query: 243 YSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPL 302
                T++ +     Q   + +D PGR+ +   G   SQ  L+  R     A G+S++P 
Sbjct: 236 L----TMEASFHSDFQPDLEDYDYPGRFTERARGKHLSQRALERHRHDYELAEGESDQPR 291

Query: 303 LRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEDGGSGATT-------YSNQFSL 355
           L +G+   L EH     N+ W++  + H+G+QPQ L+E   S   T       Y N F  
Sbjct: 292 LASGHFLPLGEHPRSDWNQLWLLTEVLHEGKQPQVLEESVTSHVDTGDGFIQGYRNHFIA 351

Query: 356 IPGHLHWR-AEPQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSC 414
            P  + +R A   PKP+V G   A V GP GEEI CDE+GRV++ F WDR    ++++SC
Sbjct: 352 TPWDIPFRPALKHPKPKVLGSQTAVVTGPVGEEIHCDEYGRVRVQFHWDREGQADDKTSC 411

Query: 415 WVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTK 474
           W+RVS  WAG +YG IAIPR+G EV+V FL GDPDQP++TG  YH  +  PY LP +KT+
Sbjct: 412 WLRVSSSWAGGRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKDHQVPYDLPANKTR 471

Query: 475 TVLRT-ETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQ 533
           TV +T  +  G G+NEL  ED+ G EQIYLHAQ+D+D  IE+D    + H+ H TVE + 
Sbjct: 472 TVFKTLSSPGGGGYNELRIEDRKGAEQIYLHAQRDWDENIEHDQKIRVGHERHDTVEANS 531

Query: 534 FTQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEA 593
           +++ K  +H T   + +  +     L++  S H+K G     EAG EIH  AG KVVI+A
Sbjct: 532 YSEFKAEEHRTTHADRKTEIRANDHLTVGNSQHLKIGTGQFIEAGNEIHYYAGSKVVIDA 591

Query: 594 GSEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFGGAMPALPGGLEPAVA--L 651
           G E+T   GGSF+K+DP+GV LSGA + +NSGG+AG GSG     P LP     AVA  L
Sbjct: 592 GMELTASGGGSFLKLDPSGVTLSGATIRMNSGGAAGKGSGLKILAPVLPWLATSAVAGSL 651

Query: 652 APPQTISY-QALLQAEQANVPAVKVCPLAA 680
             P  I+  + L QA  A +  VK C + A
Sbjct: 652 TLPALINMSRQLKQAAAAKLLLVKQCGMQA 681