Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., Rhs element Vgr protein from Pseudomonas syringae pv. syringae B728a

 Score =  265 bits (676), Expect = 1e-74
 Identities = 173/621 (27%), Positives = 307/621 (49%), Gaps = 61/621 (9%)

Query: 16  ETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQL 75
           + L++  F G E LS           F +++ L S  +++  +  + + A +++   +  
Sbjct: 25  QELLLDSFAGSEGLSAD---------FGFQLDLISDDASVKLKSAIGQSATIEIELATGG 75

Query: 76  VQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPEIL-SILLQEM 134
            + ++G V +F         + Y   +   L  ++ R++S+I+Q QTV +++  +L +  
Sbjct: 76  SRYINGHVLSFGNNGSDGGMSRYSAYIGSWLSLIAQRYDSQIYQDQTVEQVIRKVLGRYD 135

Query: 135 GINDYAFALKRDGVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDS 194
           G+  Y F + R      +  QYRESD  F+ RL  +EGL + F H A  HTL   D S  
Sbjct: 136 GLAKYEFRVNRTLKPYSYITQYRESDSHFVMRLLEQEGLFFYFEHTADSHTLIIMDDSTV 195

Query: 195 LSKLPEPIPYNALVGGAIDTPYIHGLTYRTQA---EVSEVQLKDYSFKKPAYSFLQTVQG 251
           L+ LPE            +T     +T+ + A   +  ++ ++ + +++P      T+  
Sbjct: 196 LTPLPEQPQVRFHTASVTETS--DSITHWSSAREFQAGKISVQTFDYRQPGNRIPVTMNS 253

Query: 252 TELDYQQTRYQHFDAPGRYKDDV--NGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKF 309
                    Y+ FD  G+Y      +G    + R++ L     T  G SN   +R GY F
Sbjct: 254 LNQQGDVPSYEIFDYMGQYTHGTPEDGELLVRNRIEALELKGKTFVGSSNCRAMRPGYTF 313

Query: 310 DLQEHLDPAM----NRDWVVVSINHQGEQPQALQEDGGSGATTYSNQFSLIPGHLHWRAE 365
           +L +H +       +R +++++I H+G          G     Y+N+   +   + +R +
Sbjct: 314 ELTQHYEHDTGSPDDRQFLLMNIEHRGSNNYTSGSQAG-----YANKIYCVRKKIKFRPQ 368

Query: 366 PQP-KPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAG 424
               KP + GP  A VVGP GEEI+ DE GRVK+ F WDRY   +++SSCWVRV+Q  A 
Sbjct: 369 MDLLKPGISGPQTAIVVGPPGEEIYTDEMGRVKVQFHWDRYGKFDDKSSCWVRVAQSGAS 428

Query: 425 SQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQG 484
             +G + IPR+G EV+V FL+G+PD+P++ G  Y++ NTPP++LP +KT++   T + +G
Sbjct: 429 GGFGSMQIPRVGDEVVVVFLDGNPDRPLVMGSLYNSQNTPPWSLPANKTQSGFLTRSAKG 488

Query: 485 EG--FNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQFTQIKHNQH 542
           +G   N   FED+AG EQ+ +HA+++ D                  +E D+  ++ +N+ 
Sbjct: 489 DGGTANFFRFEDKAGAEQVIMHAERNMD----------------TEIELDEKHEVGNNRK 532

Query: 543 LTVEWESREAVTGEQVLSI-EGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEAGSEITVKA 601
           +TV   + E +  + V ++ +GS  +K                  Q + ++A   I +K 
Sbjct: 533 VTVGGTNTEIIQKDTVTNVQQGSFTLKVD---------------NQFIQVDAKQYILLKV 577

Query: 602 GGSFVKVDPAGVHLSGALVNL 622
           G S + + P G+ + G ++N+
Sbjct: 578 GDSSISITPEGIQIKGKVINV 598