Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 958 a.a., Rhs element Vgr protein from Pseudomonas syringae pv. syringae B728a

 Score =  152 bits (383), Expect = 2e-40
 Identities = 137/579 (23%), Positives = 245/579 (42%), Gaps = 61/579 (10%)

Query: 43  RYEVQLASRVSNLTAEQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTL 102
           RY V + ++ ++   E+++ +  +L +  +   +   HG V +            +QL  
Sbjct: 49  RYTVDVINQTTDFDPEKLIGQAVQLSIRLDDGSLSPRHGWVESVRYLGSDGGLEDWQLVF 108

Query: 103 VPALERLSLRHNSRIFQKQTVPEILSILLQE--MGINDYAFALKRDGVQREFCVQYRESD 160
            P    L  R + RI+Q+ ++P+IL+ + Q       +Y F L+RD     +  Q+ E+D
Sbjct: 109 APWFSLLEYRIDCRIWQEMSLPDILAQVFQHYSQARANYRFDLQRDYPLLSYVTQFNETD 168

Query: 161 IDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKL-PEPIPYNALVGGAID------ 213
            +F+ R   +EGL +   H+   H + F+D  DSL  L P  + ++      +       
Sbjct: 169 ANFVQRWCEQEGLFWYVEHKVDSHCIVFTDNIDSLPTLNPASLRFHTQQAADLKDSITQW 228

Query: 214 TPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRY--K 271
           +P    L    Q   SE +    S  +P  +    +          RYQ+    G+Y  +
Sbjct: 229 SPGARLLNGLVQWRSSEYR----SHAQPQITHSMALPAASAPPDLERYQY---RGQYAWQ 281

Query: 272 DDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEH----LDPAMNRDWVVVS 327
           +   G   ++++++     A    GQ     ++ G+ F+L +H    L P  +R +++V+
Sbjct: 282 NLGRGEWLARVQIEQDESAARRIQGQGGARQMQPGHGFELTQHPLYELKPLQDRQFLIVA 341

Query: 328 INH-----------------------QGEQPQALQEDGGSGATTYSNQFSLIPGHLHWR- 363
           +                            Q QA    G  G   Y N+F      + +R 
Sbjct: 342 VEFFVQSNLPIGKTRSSPPGSLKTQLDALQTQASLPAGDEGF--YLNRFETQRLDIPYRS 399

Query: 364 AEPQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWA 423
           A    KP   GP  A VV P G E+F D   RV + F WDR     E  SCW+R+ Q  +
Sbjct: 400 AFTHQKPAHPGPQTAVVVTPGGHEVFTDNLNRVCVRFHWDRLVKDGELGSCWLRMMQSSS 459

Query: 424 GSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTV--LRTET 481
           G  +G + +PR G EV+V FL+ D D+P+I G+ Y   + P +    H +  +   +++ 
Sbjct: 460 GQDWGSVNVPRAGEEVVVTFLDNDIDRPLIMGQVY-GGHKPAW----HSSGLMSGYKSQE 514

Query: 482 HQGEGFNELSFEDQAGKEQIYL-----HAQKDFDGLIEND-HTTVIRHDHHLTVENDQFT 535
            QG G+N+   +D  G+ +  +     H+Q +   LI+   ++          +  D + 
Sbjct: 515 IQGSGYNQWVMDDSTGQVRTQIHSSHGHSQLNLGYLIDQQGNSRGALRGAGFELRTDAYG 574

Query: 536 QIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWV 574
            ++  Q L +    R    G Q+ + E   H+   +  V
Sbjct: 575 ALRAQQGLYLSTWPRNKAQGGQIDTQEAQQHLSNAQARV 613