Pairwise Alignments

Query, 172 a.a., type VI secretion system tube protein Hcp from Vibrio cholerae E7946 ATCC 55056

Subject, 172 a.a., hypothetical protein from Pseudomonas fluorescens FW300-N2C3

 Score =  209 bits (531), Expect = 3e-59
 Identities = 97/166 (58%), Positives = 125/166 (75%)

Query: 4   PCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPSGQR 63
           P Y+S+ G  QGLITAGA TADS+G+++ EGHED+++VQ F+H VT+P DPQSGQP+GQR
Sbjct: 4   PAYMSVTGTKQGLITAGAFTADSVGNTYQEGHEDQVMVQAFEHQVTIPRDPQSGQPTGQR 63

Query: 64  VHKPFKFTVALNKAVPLLYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASIVDI 123
           +HKP   T   +KA PL+  AL+SGE+L  V+++WYRTS  G QE+++TT LE+A IVDI
Sbjct: 64  IHKPLIITKVFDKASPLMLAALTSGERLTEVKIQWYRTSAAGTQEHYYTTTLEDAIIVDI 123

Query: 124 HCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTSGSDDWRKP 169
              MP+CQDP  + FT    V  +YRKITW H  +GTSGSDDWR P
Sbjct: 124 KDYMPNCQDPENTHFTHLEDVYFTYRKITWTHEVSGTSGSDDWRVP 169