Pairwise Alignments

Query, 172 a.a., type VI secretion system tube protein Hcp from Vibrio cholerae E7946 ATCC 55056

Subject, 161 a.a., Hcp family type VI secretion system effector from Rahnella sp. WP5

 Score = 82.4 bits (202), Expect = 3e-21
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 11/170 (6%)

Query: 1   MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPS 60
           M  P Y+ ++     LI          G   V   E  + +  F H + +PTD  +G+ +
Sbjct: 1   MAIPAYLWLKDDGGALIK---------GSVDVLNREHSIEITSFSHNLYIPTDGNTGKLT 51

Query: 61  GQRVHKPFKFTVALNKAVPLLYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASI 120
           G RVH    F    + + P L  A+++G+ LK+ E KWYR +  G++  ++   LEN  I
Sbjct: 52  GTRVHGALIFEKEFDSSSPYLMKAVATGQSLKSAEFKWYRINDAGQEVEYYNMTLENVKI 111

Query: 121 VDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTSGSDDWRKPI 170
           V +   M  C+        + V V   Y KITW +++     SD W + +
Sbjct: 112 VSVTPMMHDCKTVINVGHLEQVQV--RYDKITWSYLDGNIQYSDAWNERV 159