Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 683 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  198 bits (504), Expect = 5e-55
 Identities = 123/361 (34%), Positives = 200/361 (55%), Gaps = 8/361 (2%)

Query: 221 QLNW-KITLALLVCASVIIVASVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKD 279
           Q NW  ++L LL     +++  +T   V+ +PL R+  ++  + +G+GDLTQRL  +  D
Sbjct: 327 QANWLNLSLGLLAAGLGLLLIWLTAYGVT-RPLLRVAHMLDAIVEGDGDLTQRLPNDRHD 385

Query: 280 EIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAIT 339
           E+G +    N F++KLQ +  D+  +S +        +  AR     ++   +E E A T
Sbjct: 386 ELGHLARGFNRFLDKLQPIIRDIQQASLDTRNTADTSAQVAREVSAGMHTQYREVELAAT 445

Query: 340 AIEEMSASAGSIAQ---SADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAET 396
           A+ EMS SA  +A+    A DAA + E  +R     ++    AV S++ L  ++ +    
Sbjct: 446 ALHEMSTSAQEVARHSHQAADAATVAENASR---SGRELFANAVTSIDSLDRRLETTLVQ 502

Query: 397 ITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRT 456
           +  ++ +++ I  VL VI AIA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LAS T
Sbjct: 503 VQALAGNSQHIGQVLDVICAIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASNT 562

Query: 457 QQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLN 516
           Q S  QI  ++  L+  ++ VV     +R    ++  +      +L  +TD+V  + ++N
Sbjct: 563 QNSVEQIRTVIEALQQLSQEVVLSTQLSREQARDSVAQVEKTHVALQHITDAVEVIEHMN 622

Query: 517 TLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFR 576
             IA++A+EQ  V  ++S  ++ I+ +   L     + +  S+ L   ++    +VG FR
Sbjct: 623 QQIASAALEQSTVVEDISHRVSDIRAISETLTSRMQEASQASHSLHAMANHQQQLVGHFR 682

Query: 577 V 577
           +
Sbjct: 683 I 683